Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03898 ATGGGATGCATGTCAGGTTTCCTACAAATCTTCGATCGCCATCAATTATTCCCCGGAAAACGCATCTACACCGTTAAAACACTCCCTTCCACTAAATCAACGGAACCGGAAATAAACGGTAACTCACCGGCTGAATCAGAATCAACACCGGAAAAACTAACACCGCAACAAGAAAAACCTTCTCTACCGGTTCACCCAGTTTTCGATTTCAAAGAAGGAACAAGATCTCCATGGAAATTCACCAGAGAAGCACCAAGACTATCATTAGATAGCAGAGCAGTTATTGATGCAAAAGGAACAATTCAAATTCACCCAAAACATGAAGAAATACGACGTCGTTCAACTTCCACCAGCGTCGTTGCAAAACTCATGGGTCTTGAAGAAGACTCTGATCCCAACCCTAAGCTTCAAAAATCTGCTTCGGAATCAAGAGCTCACAGAGATCTATCACAACAACAACAACAACAACAACAGTATCGTTTCTTTGACACTACGAATTTTCAGTTAAAGAAATTCGAGAATATTTCGTCGTTAAACGACAGTGTTTCAGATCTAAACGAGAAAACAGAGCCAGTCAGAGGAATTACAACCAGACAAAAGAAGATTTTCTATGATTCTGCTGACTTTTTTCCTGGTCCGAAACAGAGTGTTTCTGTTTCTGTTTCTGTTCAAGGTGAGATTGAAAAAAGGTTGAAGATGCGTGGTATTCACGAACCTTCTAAAGATCTTGATACATTGAAACAAATCCTTGAAGCTTTACAGCTTAAAGGTCTCTTACATTCCAAGAAATTAACAAATCATAGAAACTTTGTTATGGAAAATGTGAATGATTCTAATTCTCCGATTGTGGTTATGAAACCGGGAAGATCAATTAATCGAACCGGTTGGACCGGTTACGATTCTCCACCACCAGCTTCCACTTTCCGGTCTAAAGTTAAAACTCGTCCGGATCATATTCAATCACAGATCAAAAACAGAAACAACTTAAATTCGCCCACGCGCAGTCCCAATCGCGTGAGAAAGGTTACCATTTCAAACAGAGTTACTCCGGTTCATTCCTCGAGAAATGAACCGGACCGGAAAACACCGAACCGGTCACCAAGGATGAGAAAGAATACTGTGGCGGAAGATGAATCATCCACTGTTTCTGATAGCTCTTCACATACCGAAACAGAGAGGTTAATTACGGAGCAATACAAAGAAGGGAAAGAGTTACTACAGAGATGTGATAAGTTACTGAACAGTATAGCGGAAATAACTGAGTTACAACAACCGAGTCCGGTATCGGTACTTGACTCGTCGTTTTACAAAGATGACTCGTCGTGTTCACCTTCACCAGTAATGAAACGATGCATTGAATATAAAGATCTAGGAGCAGAGTCAGAAGATGAAACATGGAGTGCAACATTGTATTGCAATGAAGCCAAGTCAGAGGATTGTGATTTCATATACATTTCAGAAGTACTACGTGCTTCTAATTACTTGCCGGAAGACAATGACATGTTCTTGTTACTAGAACAACAACAATACCTCAAGGGAAACAACACTTCCAAAGTTTCCACTCTTCAAAGACGGTTAATCTTCGACACAATACATGAGATCCTCAACCGTAAACGACGTTTGCCACCGTGGAAGTTGGAGAACGCGCCTTCGTTAAAATTTATATGGTCTGAAATTCGGAGAATCCAAGATAGGGATGAGTCGGAGGACATGTTTGAGGTTATATGTGGAGTGTTGAGAAAGGATATGAGTGTAGAGAATGAATGGGGTGAATGCGACGTGGAAATTGGAGATGTTGTGTTGGACATCGAACGGTTCATATTCAAAGATCTTATCGAAGAAACCATTAGAGATTTAGCGTTGTGTAATAAGGTACCACGTAACAAAGTATCCATGCTTCGCAGGAAGTTAGAGTTTTAA 1920 0.4052 MGCMSGFLQIFDRHQLFPGKRIYTVKTLPSTKSTEPEINGNSPAESESTPEKLTPQQEKPSLPVHPVFDFKEGTRSPWKFTREAPRLSLDSRAVIDAKGTIQIHPKHEEIRRRSTSTSVVAKLMGLEEDSDPNPKLQKSASESRAHRDLSQQQQQQQQYRFFDTTNFQLKKFENISSLNDSVSDLNEKTEPVRGITTRQKKIFYDSADFFPGPKQSVSVSVSVQGEIEKRLKMRGIHEPSKDLDTLKQILEALQLKGLLHSKKLTNHRNFVMENVNDSNSPIVVMKPGRSINRTGWTGYDSPPPASTFRSKVKTRPDHIQSQIKNRNNLNSPTRSPNRVRKVTISNRVTPVHSSRNEPDRKTPNRSPRMRKNTVAEDESSTVSDSSSHTETERLITEQYKEGKELLQRCDKLLNSIAEITELQQPSPVSVLDSSFYKDDSSCSPSPVMKRCIEYKDLGAESEDETWSATLYCNEAKSEDCDFIYISEVLRASNYLPEDNDMFLLLEQQQYLKGNNTSKVSTLQRRLIFDTIHEILNRKRRLPPWKLENAPSLKFIWSEIRRIQDRDESEDMFEVICGVLRKDMSVENEWGECDVEIGDVVLDIERFIFKDLIEETIRDLALCNKVPRNKVSMLRRKLEF 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03898 639 MobiDBLite consensus disorder prediction 28 68 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 321 352 - -
Trre13g03898 639 Pfam Domain of unknown function (DUF4378) 481 614 IPR025486 -
Trre13g03898 639 MobiDBLite consensus disorder prediction 294 308 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 28 56 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 124 156 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 128 145 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 293 393 - -
Trre13g03898 639 MobiDBLite consensus disorder prediction 353 377 - -
Trre13g03898 639 PANTHER LONGIFOLIA PROTEIN 1 60 IPR033334 GO:0051513
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03898 Trre-Chr13 47173068 47176616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03898 77 639 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 38.821 4.72e-101 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03898 - - lja:Lj1g3v4449210.1 637.876