Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03897 ATGGGAAAAAAGGATCGTAAGCTCGAGAAACAAATTCAAAAGCAAATGGGATGCATGTCAGGTTTCCTACAAATCTTCGATCGCCATCAATTATTCCCCGGAAAACGCATCTACACCGTTAAAACACTCCCTTCCACTAAATCAACGGAACCGGAAATAAACGGTAACTCACCGGCTGAATCAGAATCAACACCGGAAAAACTAACACCGCAACAAGAAAAACCTTCTCTACCGGTTCACCCAGTTTTCGATTTCAAAGAAGGAACAAGATCTCCATGGAAATTCACCAGAGAAGCACCAAGACTATCATTAGATAGCAGAGCAGTTATTGATGCAAAAGGAACAATTCAAATTCACCCAAAACATGAAGAAATACGACGTCGTTCAACTTCCACCAGCGTCGTTGCAAAACTCATGGGTCTTGAAGAAGACTCTGATCCCAACCCTAAGCTTCAAAAATCTGCTTCGGAATCAAGAGCTCACAGAGATCTATCACAACAACAACAACAACAACAACAGTATCGTTTCTTTGACACTACGAATTTTCAGTTAAAGAAATTCGAGAATATTTCGTCGTTAAACGACAGTGTTTCAGATCTAAACGAGAAAACAGAGCCAGTCAGAGGAATTACAACCAGACAAAAGAAGATTTTCTATGATTCTGCTGACTTTTTTCCTGGTCCGAAACAGAGTGTTTCTGTTTCTGTTTCTGTTCAAGGTGAGATTGAAAAAAGGTTGAAGATGCGTGGTATTCACGAACCTTCTAAAGATCTTGATACATTGAAACAAATCCTTGAAGCTTTACAGCTTAAAGGTCTCTTACATTCCAAGAAATTAACAAATCATAGAAACTTTGTTATGGAAAATGTGAATGATTCTAATTCTCCGATTGTGGTTATGAAACCGGGAAGATCAATTAATCGAACCGGTTGGACCGGTTACGATTCTCCACCACCAGCTTCCACTTTCCGGTCTAAAGTTAAAACTCGTCCGGATCATATTCAATCACAGATCAAAAACAGAAACAACTTAAATTCGCCCACGCGCAGTCCCAATCGCGTGAGAAAGGTTACCATTTCAAACAGAGTTACTCCGGTTCATTCCTCGAGAAATGAACCGGACCGGAAAACACCGAACCGGTCACCAAGGATGAGAAAGAATACTGTGGCGGAAGATGAATCATCCACTGTTTCTGATAGCTCTTCACATACCGAAACAGAGAGGTTAATTACGGAGCAATACAAAGAAGGGAAAGAGTTACTACAGAGATGTGATAAGTTACTGAACAGTATAGCGGAAATAACTGAGTTACAACAACCGAGTCCGGTATCGGTACTTGACTCGTCGTTTTACAAAGATGACTCGTCGTGTTCACCTTCACCAGTAATGAAACGATGCATTGAATATAAAGATCTAGGAGCAGAGTCAGAAGATGAAACATGGAGTGCAACATTGTATTGCAATGAAGCCAAGTCAGAGGATTGTGATTTCATATACATTTCAGAAGTACTACGTGCTTCTAATTACTTGCCGGAAGACAATGACATGTTCTTGTTACTAGAACAACAACAATACCTCAAGGGAAACAACACTTCCAAAGTTTCCACTCTTCAAAGACGGTTAATCTTCGACACAATACATGAGATCCTCAACCGTAAACGACGTTTGCCACCGTGGAAGTTGGAGAACGCGCCTTCGTTAAAATTTATATGGTCTGAAATTCGGAGAATCCAAGATAGGGATGAGTCGGAGGACATGTTTGAGGTTATATGTGGAGTGTTGAGAAAGGATATGAGTGTAGAGAATGAATGGGGTGAATGCGACGTGGAAATTGGAGATGTTGTGTTGGACATCGAACGGTTCATATTCAAAGATCTTATCGAAGAAACCATTAGAGATTTAGCGTTGTGTAATAAGGTACCACGTAACAAAGTATCCATGCTTCGCAGGAAGTTAGAGTTTTAA 1965 0.4041 MGKKDRKLEKQIQKQMGCMSGFLQIFDRHQLFPGKRIYTVKTLPSTKSTEPEINGNSPAESESTPEKLTPQQEKPSLPVHPVFDFKEGTRSPWKFTREAPRLSLDSRAVIDAKGTIQIHPKHEEIRRRSTSTSVVAKLMGLEEDSDPNPKLQKSASESRAHRDLSQQQQQQQQYRFFDTTNFQLKKFENISSLNDSVSDLNEKTEPVRGITTRQKKIFYDSADFFPGPKQSVSVSVSVQGEIEKRLKMRGIHEPSKDLDTLKQILEALQLKGLLHSKKLTNHRNFVMENVNDSNSPIVVMKPGRSINRTGWTGYDSPPPASTFRSKVKTRPDHIQSQIKNRNNLNSPTRSPNRVRKVTISNRVTPVHSSRNEPDRKTPNRSPRMRKNTVAEDESSTVSDSSSHTETERLITEQYKEGKELLQRCDKLLNSIAEITELQQPSPVSVLDSSFYKDDSSCSPSPVMKRCIEYKDLGAESEDETWSATLYCNEAKSEDCDFIYISEVLRASNYLPEDNDMFLLLEQQQYLKGNNTSKVSTLQRRLIFDTIHEILNRKRRLPPWKLENAPSLKFIWSEIRRIQDRDESEDMFEVICGVLRKDMSVENEWGECDVEIGDVVLDIERFIFKDLIEETIRDLALCNKVPRNKVSMLRRKLEF 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03897 654 MobiDBLite consensus disorder prediction 309 323 - -
Trre13g03897 654 MobiDBLite consensus disorder prediction 42 71 - -
Trre13g03897 654 MobiDBLite consensus disorder prediction 143 160 - -
Trre13g03897 654 MobiDBLite consensus disorder prediction 368 392 - -
Trre13g03897 654 PANTHER LONGIFOLIA PROTEIN 7 75 IPR033334 GO:0051513
Trre13g03897 654 MobiDBLite consensus disorder prediction 308 408 - -
Trre13g03897 654 Pfam Domain of unknown function (DUF4378) 496 629 IPR025486 -
Trre13g03897 654 MobiDBLite consensus disorder prediction 336 367 - -
Trre13g03897 654 MobiDBLite consensus disorder prediction 139 171 - -
Trre13g03897 654 MobiDBLite consensus disorder prediction 42 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03897 Trre-Chr13 47173023 47176616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03897 92 654 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 38.821 6.21e-101 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03897 - - lja:Lj1g3v4449210.1 656.751