Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03889 ATGAGTTTGGAAAAGAATCCGTGTGTATTTTTCGATGTATCAATTGATGGGGATCCCGTGGAAAGAATCGTTATTGAGCTTTTTTCTAGCGTAGTTCCTAAGACAGCTGAGAATTTTCGGGCCCTATGTACAGGTGAGAAGGGGATTGGAGAAGCAACCGGGAAACCTTTGCATTATAAAGGAACATGTTTTCATCGTATAATTAAAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAGGGGCAATGGCACTGGTGGAGAAAGTATATATGGAGGAAAGTTTACAGATGAAAATTTCAAACTAAAACATGATGGACCTGGTGTCCTTTCTATGGCTAATAGTGGTCCTAACACCAATGGATCTCAGTTTTTTATTATATTCAAGCGTCAGCCTCATCTTGATGGGAAACATGTTGTTTTTGGAAAAGTTACCAAGGGAATAGATATTCTGAAGAAAATGGAGCAGTTGGGAACAGCGGATGGGAAACCTACCCAGCCAATTAAAATTGTTGATTGTGGTGAAGTTTCTAAAGCAAAAACTCAGCATACTGTTGAGAAGGAGAAAGGGAAAAGTAGAAAGTCAGCAAAATCCTTAACTTCTGATGATAGTTCTGATGCTGGCAAAAAGTTAAGTAGAAAAAGAAAAACATCTTCCAAAGACAGGAGGAAGAGAAGGAGGAAATATTCATCATCTGATAGTGACAGTGACAGTTATTCCTCAGATTCTGAATCAGGCTCACCTTATTCTGATTCAAGTTCTTCTAGCTATGGGAAACACCAGAAGAGGAAGAGAAGTAAACGCAGACATGGGAAGAAGAGAAGTATTGGACGGAAGCAGAGAAGAAGCAAGCACAGTCGTAGAAGATCAAAACACAAGTCCAAAAGGAGTTCTGAAGGTTCGAGTGATACAGAAAGTGACAGTTCTAGTGCTAGTGACAGTAGTTCTGGTGATAAGAAAGCTGATCGTCATGTCTCTGGTCGTAAAAAACAAGCTGACAACAAAACTAAAAAAAACCTAGGCACAGAAAAGCAATCTTCTAGCCTTCTCTTACAAAGTCCAACTAGTCCAGAACTAGAGGTGGATCCCAAGGTTAGAACGACTGTGGAAAAGCAATCACACGAAGAAGGTGAATTGTCTCCAGAAAATGGTGAATTTCTGAATAACGGGCATGATACTCAAGCTGAATTTATTAAACCTGCTGATCAACGGGCTTATTCAGATGATTCAAATCACAATAGAGATACGAGTCCCGGGAGAAGTCCTGCTAGGAGTCCTACCAAGAGTTCTAGAGAGCTGAACCAAGGACGTGCTCTATTGGCTAGTCCTGACCATAAAGCATCTGAACCTGCTGCCTCCAAACATGGCCGGGGAATTTCAAAAAGCCCTTCGCCAAATGGTAAGCGCGTTAAAAAAGGACGAGGCTTTACTGAGCGGTTTGCCTTTGTACGCAGATACCGTACTCCATCTCCAGAGAAGTCTCCTCGTTCATATCGTTATGGGGATAGAAATATTAGAAGGGACTTTGATAGAAATACAAGCCACAGAAGTTATTCTGAGCGCTCGCCACCACGACGTTTTCGCAGCCCACCAAGGGGCAGCCGTCCCAGATACCAAAGCAGAAGAAGTCGGAGCAGAAGTATCTCCCGCAGTCCAGTACGCGGCCGTTATAGAGACAATGGCCGTGGCCGGAGTCCAATACGCAGTGTTAGCCCAGAAGAAAGACGACCTCTCATAAGTGACAGATTAAAATCCCGACTTGGTGCGCGAGGTAGTCAACAATCTCCGGAGAGAGCGAGGTCAAAGTCAAATTCGAGAAGCAAGGGCTCTTCTCGTTCCAGATCCCCTGACGGTATACCCCCAAGGCGCTATGATAAAAGGACTTCCGTAGCTCGTAGCAGGTCCAGATCAAGCTCATCTGGACACAAGGGTTTGGTTTCCTATGGAGATGCTAGTCCCGATTCAGGGGCTAGGTAG 1974 0.4382 MSLEKNPCVFFDVSIDGDPVERIVIELFSSVVPKTAENFRALCTGEKGIGEATGKPLHYKGTCFHRIIKGFMAQGGDFSRGNGTGGESIYGGKFTDENFKLKHDGPGVLSMANSGPNTNGSQFFIIFKRQPHLDGKHVVFGKVTKGIDILKKMEQLGTADGKPTQPIKIVDCGEVSKAKTQHTVEKEKGKSRKSAKSLTSDDSSDAGKKLSRKRKTSSKDRRKRRRKYSSSDSDSDSYSSDSESGSPYSDSSSSSYGKHQKRKRSKRRHGKKRSIGRKQRRSKHSRRRSKHKSKRSSEGSSDTESDSSSASDSSSGDKKADRHVSGRKKQADNKTKKNLGTEKQSSSLLLQSPTSPELEVDPKVRTTVEKQSHEEGELSPENGEFLNNGHDTQAEFIKPADQRAYSDDSNHNRDTSPGRSPARSPTKSSRELNQGRALLASPDHKASEPAASKHGRGISKSPSPNGKRVKKGRGFTERFAFVRRYRTPSPEKSPRSYRYGDRNIRRDFDRNTSHRSYSERSPPRRFRSPPRGSRPRYQSRRSRSRSISRSPVRGRYRDNGRGRSPIRSVSPEERRPLISDRLKSRLGARGSQQSPERARSKSNSRSKGSSRSRSPDGIPPRRYDKRTSVARSRSRSSSSGHKGLVSYGDASPDSGAR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03889 657 CDD cyclophilin_ABH_like 7 173 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 258 294 - -
Trre13g03889 657 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 527 550 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 362 380 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 340 354 - -
Trre13g03889 657 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
Trre13g03889 657 MobiDBLite consensus disorder prediction 551 582 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 470 526 - -
Trre13g03889 657 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Trre13g03889 657 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Trre13g03889 657 MobiDBLite consensus disorder prediction 233 255 - -
Trre13g03889 657 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 MobiDBLite consensus disorder prediction 212 226 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 415 435 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 178 211 - -
Trre13g03889 657 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Trre13g03889 657 Gene3D - 1 182 IPR029000 -
Trre13g03889 657 MobiDBLite consensus disorder prediction 177 657 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 586 613 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 617 631 - -
Trre13g03889 657 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03889 Trre-Chr13 47130954 47135949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03889 25 171 U-box Gene Family AT5G67530 48.322 8.54e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03889 K09566 - gmx:100807327 743.421