Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03887 ATGTCTAACAATCATAATCTACAATATGATGGTACTTCATTTATCATTGACATAACAAGTACCCTTAACAATGTCACTTCTAAATACACAAACAATGCAAAAAAAAGGTGGCGTTTTGCTTATACAGCAATTTATTCTAGAAGGGTTATGCTTTCCCTTGCAAAAGAGGTCATATCTAGAAAAAATCCAAATCACTATACAAAACTCTTTCATACACAATCTTCTTCTAGTTCCAATACCACTCTTGATATAATTGAACCTCTAATTACACAACATAATTATGGAACCAAAACCAAAGTTTCTGATTCTGTTGATAAAACAAAACTTGCTGATATGGTTAAGGACAAAAACTTGAAGTCCTTGATTGAGTTTGGTGGAGTTGAAGGTGCTAGAAATGTTCTTGGAACAGTTCATGACAAAGGAATCATTGGAAGCGATGACGATATTTCGAGGCGGATCGAGTTATTTGGTTCGAATACTTACAAAAAACCACCACCAAAAGGTCTTTTACATTTTGTACTTGAAGCTTTCAATGATACAACTATTATTATTCTTCTTGTTTGTGCTGGTCTTTCCCTTGGTTTTGGCATAAGAGAACATGGTGCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTCTTGCAGTTTTTCTTGTTGTTGTTGTAAGTGCATTAAGCAATTTCAGACAAGAAAGACAGTTTCATAAATTGTCTAAGATAAGTAACAATATCAAAGTTGAAGTTGTTAGAAATGGAAGGCCACAAAAGATATCAATCTTTGATGTTCTTGTGGGAGATATTGTTTCTCTCAAAATTGGTGATCAAATTCCAGCTGATGGAGTTTTTTTGTCAGGTCATTCACTTCAAGTGGATGAATCTAGCATGACAGGTGAGAGCGATCATGTAGAGATCGAGCATTTAAGCGCGCCTTTTTTGTTATCCGGCGCGAAAGTTGTCGACGGATATGCTCAAATGCTTGTGACATCAGTGGGAAAAAACACATCATGGGGTCAAATGATGAGCTCGATATCGCGAGACACTAACGAAAGAACCCCGTTACAAGCGCGGCTTGACAAGTTAACCTCTTCGATCGGAAAGGTTGGACTTGCGGTAGCGTTTCTTGTTCTTTTAGTGTTGTTGATTCGTTATTTTACCGGTAACTCGCAAGAAGATAAAGGGCATAAGAAGTTTCGAGGAAGTAAAACCGATATAAACGATGTTTTAAATTCTGTTGTGAGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCTATCCCTGAGGGTTTGCCATTGGCTGTGACACTCACACTTGCTTACTCCATGAAAAGAATGATGGGAGATAATGCTATGGTGAGGAAACTTTCTGCTTGTGAAACTATGGGATCAGCAACAGTTATCTGCACCGATAAAACTGGTACCTTGACATTGAATCAAATGAGGGTTACCAAGTTTTGTCTCGGCATCGAAAACTTTACGGAAACATTTTCCAATGCAATGGCTCCAGAAGTTCTTGAATTGTTCCATCAAGGGGTAGGCCTAAATACAACTGGTAGTGTCTATAATCCTCCATCAGGATCCGAACCTGAAATTTCGGGCAGTCCAACGGAGAAAGCTATACTCTTGTGGGCTGTATCGGAATTAGGTATGAGCATGGATGAAATGAAACAGAAACATAAAGTCCTTCATGTTGAAACATTTAACTCGGAGAAGAAACGAAGTGGCGTTGCGATAAAGAAGGAGAACGACGACAGAGTTCATGTGCATTGGAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAACTATATTGATAGTAATGGCGTGAAGAAATCTCTTGTTGATGAAGAACGGAGCAAAATTGAGACGATAATCCAAGGTATGGCTGCTAGTAGTCTAAGATGTATTGCTTTTGCTCACATGGAGATTTCAGATTCAGAAGGTAATGATTATATGATCACAAGGGAGAAAAAATCACATCAAATCCTAAGAGAAGATGGATTGACCTTGCTTGGCATTGTTGGCCTCAAGGATCCATGCAGACCAAACACAAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACCGCAAAGGCAATAGCAATGGAATGTGGTATATTAGATCCTAAAAATGCCAATGCAAATGCTGGAGAAGTTGTGGAAGGTGTGGAATTCAGAAACTATACAGAAGAAGAAAGAATGGAGAAAGTCGATAAGATCCTAGTAATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTTCAATGCTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGCGATGGCACGAACGATGCACCTGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTTGCAAAAGAAAGTTCTGATATCGTTATCTTAGACGACAACTTCAATTCGGTTGCAACTGTTTTAAGATGGGGAAGATGTGTTTACAACAACATTCAGAAATTTATTCAGTTTCAACTAACAGTCAATGTTGCAGCACTTGTGATAAACTTTATCGCCGCGGTTTCCTCCGGTGATGTTCCTTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGATACATTAGGTGCTTTGGCATTAGCAACAGAAAGACCTACAAAAGATTCTTCTGATTATGCAGTTTTATGGAAAATCAATCTTCAATGCATTCTGAAAAACCACTTGTTTATTGGAATTATTGGTATTACTATTGTTCTTCAAATCTTAATGGTGGAACTGCTAAGGAAATTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGGATTTGTGTTGCCATTGCAGTTGTTTCATGGCCACTTGCATGCATAGTAAAGCTCATACCTGTTTCAGATAAACCTTCATTCAGCTATACTAAGTGGATTAAATTATTAGTTCTCAAGATTAAGAAGGTTTTTTAA 2985 0.3832 MSNNHNLQYDGTSFIIDITSTLNNVTSKYTNNAKKRWRFAYTAIYSRRVMLSLAKEVISRKNPNHYTKLFHTQSSSSSNTTLDIIEPLITQHNYGTKTKVSDSVDKTKLADMVKDKNLKSLIEFGGVEGARNVLGTVHDKGIIGSDDDISRRIELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIREHGAGEGWYEGGSIFLAVFLVVVVSALSNFRQERQFHKLSKISNNIKVEVVRNGRPQKISIFDVLVGDIVSLKIGDQIPADGVFLSGHSLQVDESSMTGESDHVEIEHLSAPFLLSGAKVVDGYAQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKVGLAVAFLVLLVLLIRYFTGNSQEDKGHKKFRGSKTDINDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFCLGIENFTETFSNAMAPEVLELFHQGVGLNTTGSVYNPPSGSEPEISGSPTEKAILLWAVSELGMSMDEMKQKHKVLHVETFNSEKKRSGVAIKKENDDRVHVHWKGAAEMILAMCTNYIDSNGVKKSLVDEERSKIETIIQGMAASSLRCIAFAHMEISDSEGNDYMITREKKSHQILREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIAMECGILDPKNANANAGEVVEGVEFRNYTEEERMEKVDKILVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKDSSDYAVLWKINLQCILKNHLFIGIIGITIVLQILMVELLRKFADTERLTWEQWGICVAIAVVSWPLACIVKLIPVSDKPSFSYTKWIKLLVLKIKKVF 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03887 994 Gene3D - 901 974 - -
Trre13g03887 994 Gene3D - 145 344 - -
Trre13g03887 994 PRINTS Sodium/potassium-transporting ATPase signature 461 482 - -
Trre13g03887 994 PRINTS Sodium/potassium-transporting ATPase signature 588 606 - -
Trre13g03887 994 PRINTS Sodium/potassium-transporting ATPase signature 212 232 - -
Trre13g03887 994 Pfam Cation transporter/ATPase, N-terminus 126 192 IPR004014 -
Trre13g03887 994 SFLD p-type atpase 450 834 IPR044492 -
Trre13g03887 994 NCBIfam HAD-IC family P-type ATPase 410 490 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g03887 994 NCBIfam HAD-IC family P-type ATPase 212 385 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g03887 994 NCBIfam HAD-IC family P-type ATPase 755 861 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre13g03887 994 Gene3D - 175 896 - -
Trre13g03887 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 124 972 IPR023298 -
Trre13g03887 994 FunFam Calcium-transporting ATPase 675 826 - -
Trre13g03887 994 SFLD Haloacid Dehalogenase 450 834 - -
Trre13g03887 994 NCBIfam calcium-translocating P-type ATPase, PMCA-type 98 896 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre13g03887 994 FunFam Calcium-transporting ATPase 220 344 - -
Trre13g03887 994 SMART Cation_ATPase_N_a_2 123 197 IPR004014 -
Trre13g03887 994 Gene3D - 478 680 IPR023299 GO:0000166
Trre13g03887 994 SUPERFAMILY Calcium ATPase, transduction domain A 243 342 IPR008250 -
Trre13g03887 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Trre13g03887 994 FunFam Calcium-transporting ATPase 478 680 - -
Trre13g03887 994 Gene3D - 465 826 IPR023214 -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 673 684 - -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 291 305 - -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 781 800 - -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 805 817 - -
Trre13g03887 994 PRINTS P-type cation-transporting ATPase superfamily signature 695 705 - -
Trre13g03887 994 PANTHER CATION TRANSPORTING ATPASE 910 972 - -
Trre13g03887 994 SUPERFAMILY HAD-like 466 886 IPR036412 -
Trre13g03887 994 Pfam haloacid dehalogenase-like hydrolase 466 795 - -
Trre13g03887 994 Pfam E1-E2 ATPase 244 446 - -
Trre13g03887 994 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 684 IPR023299 GO:0000166
Trre13g03887 994 Pfam Cation transporting ATPase, C-terminus 909 969 IPR006068 -
Trre13g03887 994 Pfam Cation transporting ATPase, C-terminus 866 896 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03887 Trre-Chr13 47103947 47107132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03887 33 981 Primary Pumps ATPases AT3G63380 61.561 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03887 K01537 - gmx:100790034 1366.29