Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03886 ATGGTGAAATCACCGTCGCAGACACCACCGCCGTCGCCACCACCATCGCCGCAACCACAGCCGCCGCAATTTCATCACTTACAATCGGCCACCGATATTATTCGTTTGATGACTAAGGACCTCCCTCGTCCTATCTCGCCGTTGCATTCTTCGTACCTGGAACTTTCAGAAGAATCACCACCGGCAGTTACTGTTCATTCACCGCCACCATCGCCACCTTCATCGCAACAACTACCACCGCCGCAATCACTTCTTCATCCCTCACAATCGGCCACCGATATTGTTCGTTTGATGACTGAGGACCTCCCTCCTCCTATCTCGCCGTCGCATTCTTCGTACCTGGAACTTTCAGAAGAATCACTACCGGAAGTTACTGTTCATTCACCGCCACCTTCGCCGCAACAGCTACCACTGCCAGAAAATTGGTCTACAGAAGAAGAAAGGTTGTTTGAGCAAGGGACAAAGGCATGTGGAAAAGATTGGGAGCTCATATCAGCAGATTATGTTAAGACGAAAACTCCTATTCAAATAAGTGAGTATGCTAAGAAGATGCTTATGTGA 561 0.4902 MVKSPSQTPPPSPPPSPQPQPPQFHHLQSATDIIRLMTKDLPRPISPLHSSYLELSEESPPAVTVHSPPPSPPSSQQLPPPQSLLHPSQSATDIVRLMTEDLPPPISPSHSSYLELSEESLPEVTVHSPPPSPQQLPLPENWSTEEERLFEQGTKACGKDWELISADYVKTKTPIQISEYAKKMLM 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03886 186 Gene3D - 141 186 - -
Trre13g03886 186 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g03886 186 CDD SANT 141 185 IPR001005 -
Trre13g03886 186 SUPERFAMILY Homeodomain-like 140 182 IPR009057 -
Trre13g03886 186 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g03886 186 SMART sant 138 186 IPR001005 -
Trre13g03886 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 186 IPR017930 -
Trre13g03886 186 MobiDBLite consensus disorder prediction 81 95 - -
Trre13g03886 186 Pfam Myb-like DNA-binding domain 140 184 IPR001005 -
Trre13g03886 186 ProSiteProfiles SANT domain profile. 137 186 IPR017884 -
Trre13g03886 186 MobiDBLite consensus disorder prediction 38 139 - -
Trre13g03886 186 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03886 Trre-Chr13 47047372 47049730 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre13g03886 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03886 - K26242 aip:110265393 51.2174