Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03875 ATGAACTATTTGTACCCGGTGAAAGAAGAGTATTTGGAAATCGAATCAACATCGTCAGCGGCGTCAAGATATGAAAGAGGAAGTGATGAGGGATCAATGGTTGTTATTCCACGGCCAATGGAGGGACTTCATGAAGTAGGACCACCACCATTTCTAACAAAGACATATGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAACAGAGATGGTGCTAGCTTTGTTGTTTGGGATCTAAATGCTTTCTCAAGAGATCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGCTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTTTGAGAGGACATAAAAATCTTTTGTCAAACATTAAGAGAAGGAGACAAAGTTCATCACAACCTAGTACTTCACAAACACATTCACAAGGTCATTGTGTTGAAGTTGGTCGTTTTGGATTAGATGAAGAAATTGTTCATTTGAGACGTGACAAACAAGTGTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAACACAAGATCTTTACTTCAATCAATGGAGGAAAGGTTACGCGGAACCGAAATTAAGCAGCAACAAATGATGGCTTTTTTAGCTAGAGCTATGAAGAATCCAGCTTTTATTCAACAATTACTTCAACATAAGGAAAAGAGAAAAGAGATTGAAGAAGCTATTACTAAGAAGAGGAGAAGACCAATTGAGTATGGAGAATCAAGCAATAATGATGTTAAATATGGATTTGAAGTGTCTGAATTGGAGGTTCTTGCTATGGAAATGCAGGGTCTTGGAAGAGGTAAGAGAGAACATGAGGAAGAGATTGAGGTTTTTGAGACTCATGAGAAATTGAATAAAGAACTTGATGAAGAGTTTTGGGAAGAACTTTTTAGTGAGAAATTTGAGAATGAATTAGATATTCTAACATCTCAAGGAGATGATTATGATGATGATGTTGATGGTGAAGATCATGTCGATGTGTTGGCTAATCACTTTGGTTACTTGGGTTCAAGTCCTAAATGA 1080 0.3685 MNYLYPVKEEYLEIESTSSAASRYERGSDEGSMVVIPRPMEGLHEVGPPPFLTKTYDVVEDPTTSHIVSWNRDGASFVVWDLNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKNLLSNIKRRRQSSSQPSTSQTHSQGHCVEVGRFGLDEEIVHLRRDKQVLMMELVKLRQQQQNTRSLLQSMEERLRGTEIKQQQMMAFLARAMKNPAFIQQLLQHKEKRKEIEEAITKKRRRPIEYGESSNNDVKYGFEVSELEVLAMEMQGLGRGKREHEEEIEVFETHEKLNKELDEEFWEELFSEKFENELDILTSQGDDYDDDVDGEDHVDVLANHFGYLGSSPK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03875 359 SUPERFAMILY "Winged helix" DNA-binding domain 47 140 IPR036390 -
Trre13g03875 359 SMART hsfneu3 47 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 Coils Coil 232 252 - -
Trre13g03875 359 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 PRINTS Heat shock factor (HSF) domain signature 51 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 257 IPR027725 -
Trre13g03875 359 FunFam Heat shock transcription factor 1 44 141 - -
Trre13g03875 359 Pfam HSF-type DNA-binding 51 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 ProSitePatterns HSF-type DNA-binding domain signature. 90 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre13g03875 359 Coils Coil 170 204 - -
Trre13g03875 359 Gene3D - 44 141 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03875 Trre-Chr13 46936458 46938529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03875 25 357 HSF AT3G22830 52.105 5.37e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre13g03875 HSF_DNA-bind 8.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03875 K09419 - gmx:100794264 501.516