Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03872 ATGCAGCAAAACACTCTCATTCTTCTTCTTCGTTCAAATCTCAGCTTAGCCCCTTCTCTTTTATCTATCGCCATACACTCCATCCTTTCATCTCTGGCATGGCGTCCTTCTCATCATCCAGATGATGACTGTGTGGTTATTCCAAATCCTGAAGGCTATCAACCTGTTGAAACGATTGCCAATGAAGAAGTCGAGGACTATGTGAATGTTTCAAATTTTGGAGGTTGTTCTCAACCTGTTGATACATTTATTGATGAAGAGGATGGCTATGATCAATCCCTTCCAGAATTTCTCACTGGTGCCATGAGAAAATTCCCTGCATTCAATGATGATCGAAAGTTTGGTTGGAGGCTTACTATCAGTCATGCTTATGCTACTTCTACTAAGCATCAGGTTTTGTATATTCCAGCGGACACTGTTAAGCAAGTTCTTAAAAATAGGAAGAGCATTGTGATTAGAACTCCCCACAAGTTGGATGGGATCAAGTGCAACATAGTCACCTACAAAAGGAAACCAGGGAAGATGGAGATGTATCTTAGCAAGGGTTGGTTTGAGTTCATGAGAGCTAACAGTTTGAGGGAGGGAGATGTATTAGAATTTCAACTTTCAGATCCGCCCGAAGCTGTGGCTGTGGACATTATTCGAGGAAGCAGTTGA 657 0.4186 MQQNTLILLLRSNLSLAPSLLSIAIHSILSSLAWRPSHHPDDDCVVIPNPEGYQPVETIANEEVEDYVNVSNFGGCSQPVDTFIDEEDGYDQSLPEFLTGAMRKFPAFNDDRKFGWRLTISHAYATSTKHQVLYIPADTVKQVLKNRKSIVIRTPHKLDGIKCNIVTYKRKPGKMEMYLSKGWFEFMRANSLREGDVLEFQLSDPPEAVAVDIIRGSS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03872 218 ProSiteProfiles B3 DNA-binding domain profile. 118 217 IPR003340 GO:0003677
Trre13g03872 218 Pfam B3 DNA binding domain 127 215 IPR003340 GO:0003677
Trre13g03872 218 CDD B3_DNA 118 215 IPR003340 GO:0003677
Trre13g03872 218 SUPERFAMILY DNA-binding pseudobarrel domain 125 205 IPR015300 -
Trre13g03872 218 Gene3D - 101 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03872 Trre-Chr13 46916148 46919000 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g03872 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03872 - - tpra:123886203 136.732