Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03863 ATGGCTTCTACTTCAAGGAGATTACCAACACCTGAAGAAAGAGAAAAATGGAAACACATTTTTGACACTACCATAGATCCAAATCTGGTACCAATTGAAATCTCTCAGCCTTTTTTCAACAAAATGAAAAGTGAGTTTATAAAGCACACATTTGGTTGGATCAGGGGTCCCAAAAAAATGAAATTCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGCTATACCAACAAGGGTGACACTTAGCTATGTGATTGACGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCAGAGAAAATTCTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACACCCAAATTTGAAGATTCGTGCATCTGAGAGAAAAAAATATTTGAAGTCCACACCAAAGAAATCAAACAAACAACATCAGTCTAAGCATTCAAGGAAACCAGTAATTGTAAAGTTGAATCCTGATGGAAGCTATAGTTGGGAGAAGATTGTAACTACAGTTGCTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTGTCTACATTGTTTTTGGGAGAAAAACAAAACAAGATGTTGGTCCAAGCTGGAGCAGGAGATACATTCTCTTGCAAGCTTATTACAGCGGGAAGGAATGCAGCTGAAAAATATATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGCTGGAGACAAGCTCATTTTCACTCTTCAGAACCCACCAACAAAACTCCTGATTCAGATCATCCGTTGTAGTGCTCACGATTGA 858 0.3846 MASTSRRLPTPEEREKWKHIFDTTIDPNLVPIEISQPFFNKMKSEFIKHTFGWIRGPKKMKFMVRYLQSNSGIKLSSGVCVSRYFGFAIPTRVTLSYVIDENTFWMRIYPPLQPVKTEFPPEKILKSTPKELSKQRHPNLKIRASERKKYLKSTPKKSNKQHQSKHSRKPVIVKLNPDGSYSWEKIVTTVAAADARPQVMHFPKQLSTLFLGEKQNKMLVQAGAGDTFSCKLITAGRNAAEKYISKEWSKFVRRNNLQAGDKLIFTLQNPPTKLLIQIIRCSAHD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03863 285 Pfam B3 DNA binding domain 200 280 IPR003340 GO:0003677
Trre13g03863 285 SUPERFAMILY DNA-binding pseudobarrel domain 187 280 IPR015300 -
Trre13g03863 285 ProSiteProfiles B3 DNA-binding domain profile. 185 282 IPR003340 GO:0003677
Trre13g03863 285 MobiDBLite consensus disorder prediction 126 152 - -
Trre13g03863 285 SMART B3_2 186 282 IPR003340 GO:0003677
Trre13g03863 285 Gene3D - 124 283 IPR015300 -
Trre13g03863 285 CDD B3_DNA 200 280 IPR003340 GO:0003677
Trre13g03863 285 MobiDBLite consensus disorder prediction 153 169 - -
Trre13g03863 285 MobiDBLite consensus disorder prediction 126 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03863 Trre-Chr13 46884503 46886585 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g03863 B3 2.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03863 - K09287 tpra:123916786 120.938