Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03857 ATGGGTCAGAGGCAGTTGGTTTGCCTAGGTAGGGTTCTGCTTAAGAAGAGCAACATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACTGATAATTTCATTCAACAAACTCTTAGACAGCATTTCACGTACTCTACCGTCATTACTATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATAACTTCCCAACCACATTGCTTGAGGATAAGTTATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGCCCAACTCAAAATTTTGA 321 0.3988 MGQRQLVCLGRVLLKKSNILVLDEATASVDTATDNFIQQTLRQHFTYSTVITIAHRITSVLDSDMVLLLSQGLIEEYNFPTTLLEDKLSSFAKLVAEYTMRPNSKF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03857 106 Gene3D - 1 104 IPR027417 -
Trre13g03857 106 Pfam ABC transporter 2 27 IPR003439 GO:0005524
Trre13g03857 106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 86 IPR027417 -
Trre13g03857 106 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03857 Trre-Chr13 46777632 46778038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03857 2 86 Calmodulin-binding Proteins AT2G36910 29.412 9.49e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03857 - - gmx:100811245 172.17