Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03855 ATGAACCTTGCAACTGAATTTCTTCAAAAACCCATTTTTCTTCATGGGTTATCTATTATACTTCATATACTATTGCTTTTAGCACTTTTAGTTTCATGGGCTTTGAAAAAAATCAAAACTTGTGTTGTGATCAATGAGACACCAAATAGCACTAGCACTTGGTTTAAGGTCACAAAGTTTAGTTGCATTGGTTTTTCTTCTTTTAATTTTGTTTTGTTTCTCTTTAATTATTGGTATTTAAGTGTTTGGTCAGAAGAAAATGTTGTTACCCTTTTTGATTTATCTCTCAAAACAGTTACTTGGTGTGTTGTTTCTGTTTGTTTTCACAAAGGGTTCTTCTTTTTGTTCAGTTCAGATCAAAGAAAAACAAAGTTTCCATTTTTCTTTAGAGTTTGGTGTGTTTTTTATCTCTTTGTTTCTTGTTATTGGTTTGTGATTGACATTGTTGTTTTGTATGAAAATCATATTGAGTTAAGGGTTCAATGTTTGGTTTCTGTTGTGGTATCATTTTGTGTTGGTTTTTTGTTTTGTTATGTTGGGTATTGTGTGAAAAATGAGAGTGAAGAAGGTGATAATAGAACTCTTCAAGAGCCTCTTTTGAATGATAATGATAATGCTTTAGAGTTAAAAGAGACTAAAGGGTGTGACACTGTTACTCCTTATTCAAATGCTGGAATTTTGAGCCTTCTTACCTTATCTTGGGTGGGTCCACTTATAGCATTTGGCAATAAGAAGACCTTAGACCTTGAGGACGTTCCTCAGCTAGATAGTCGAGATAGTGCGGCCGGAGCTTTTCCAATTTTCAGAGACAAAGTTGAAGCTGATTGTGGTGCAATCAATAGAGTAACCAGACTTAAGTTGGTTAAGACATTGATAATCTTCTTGTGGAAAGAGATTCTTATCACTGGTTTTCTTGTACTGATGAAAACCTGTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTAGTGGAAAAAGGCTATATAAGAATCAAGGTTATGCCTTGGTTTCTGCCTTTATATTTTCACAGCTTGTAAGATCCTTATCACAAAAGCATTGGTTCTTTAAGTTGGAGCAACTCGGAGTACGAATCCAAGCAGTGCTTGTGACTATTATATATGAAAAAGCCTTAACACTTTCTTGTCAATCAATGCAGTGTCACAGTTCTGGAGACATAACCAATTTAATTACCGTTGATGTCGAAAGAGTTGGTCATTTCAGTTATTACTTGCATGATTTTTGGATAGTAGCTTTGGAAGTTACATTGGCATTGTTGATTTTGTATAAAAACCTTGGACTTGCTTCCATTGCTGCTCTTGTTACAACCATCATTATTATGTTGGCAAATCTTCCATTGGGATCATTGCAAGGAAAGTTTCAAAAGAAGTTGATGGAGTCAAAAGATACTAGAATGAAGAGCACATCTGAAACTTTAAGGAACATGAGAATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACCGAGCTAAGGGATGCCGAACAAGGCTGGTTGAAAAAATTTCTTTATTCTTCAGCTATGACTAAATTTTTCTATTTTGGTGCATCTACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTCATAGGGACCCCACTTGAATCAGGAAAGATTCTGTCGGCAATAGCGACATTCAAGGTTCTTCAAGGGCCTATTTATAATCTTCCAGATTTCATTTCAATGATAGCAAAAACTAAAGTTTCTCTTGATAGGATCGTGTCGTTCCTTCGTCTTGATGACTTGCAGTCTGATGTTGTCGAAAAGCTTCCTCCGGGTAGTTCTGACACTTCAATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCACCTAATCCAACTTTGCAGAACATTAACCTCAAAGTTTTTCATGGCATGAAGGTTGCTGTTTGCGGTACAGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACAAATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCCTCAAGAAGGATCTGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGAATTAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATACTTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTGTTGGGTGTTTTACGTTCAAAAACGGTGGTTTATGTTACTCATCAAGTGGAGTTTTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGATGAACTTCTTAATATTGGAACCGATTTCATGGAACTTGTTGGGGCACACAGAGAAGCTTTGTCTACACTTGAATCATTGGATGGAGGAAAAGCCTCTAATGAAATAAGTACATTAGAAGAAGAAGTAAATATCGAAGAGGAAAACAAAGAAGTGCAAGTAGATGATAAAGGCGAACCGAAAGGCCAAATTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTTTCGTACCGTTCATATTATTGGCTCAGATTCTTTATCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGTGTGGGAAACTCCCAACTCAGCCGATGTGAAGCCACCTGTTGAAGGAACGACTCTTATTGAAGTCTATGTTGTTTTGGCCATTGGAAGTTCTTTATGCATGCTTGTTATGGAATTGTTACTTGTTACAGTTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATCTTTCGCGCCCCCATGTCATTTTTCGATTCTACTCCAAGTGGACGAATCCTTAATAGAGCTTCTACTGATCAAAGTGCAGTGGATACAGACATTCCTTATGAAATCGGCTCATTTGCCTTTAATGTGATCATTCTTCTAGGAATTATAGCAGTGATGTCTCAGATTGCATGGCAAGTTTTCATTGTCTTTGTACCTGTGATAGCACTCAGCATTTGGTATCAGCAATATTATTTACCAGCAGGCCGTGAACTGTCACGTTTAGTTGGAGTATCGAGAGCCCCAATCATTCAACACTTTGCGGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTAATCAACAGTCAAGATTTCTTGAAACAAATATGAAACTGGTTGATAGGTATTCTCGGCCACAGTTCAACATGGAGGTTGCTATCGAATGGTTAGGTCTCCGCTTAGATGTGTTGTCTACCATCACATTTGCCTTTTCCTTGATATTCTTGATATCGGTTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCTGTTACCTATGGTCTAACTATAAACGCGATACAATATAGGGTGATATGGAGTATTTGCAGCTTGGAGAACAATATTATATCGGTAGAAAGGATACTTCAACATACAACCATTCGTAGTGAGCCTGCCCTTGTTTTAGAAGAAAATAGGCCAGATCCTTCTTGGCCCTCATATGGCAAGGTTGATATACGGAACTTGCAGGTTCGATATGCTCCACATCTTCCACTCGTGTTGCATGGCCTGACATGCACATTTCATGGAGGATTTAAAACTGGCATTGTTGGTAGAACAGGTAGTGGGAAAACAACTCTTATGCAAACACTTTTCCGACTTGTTGAACCTACTGCTGGGGAAGTTATCATTGACAGCATCAACATCTCTACAATTGGACTGCATGATTTGAGGTCTCGACTAAGCATTATTCCGCAAGATCCAACAATGTTTGAGGGGACAGTGAGAAGTAATCTGGACCCCCTTGAAGAGTACACTGACGAACAAATCTGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTCGAAAGAAAGAAGGAAAGCTTGAATCTTCAGTTACTGAAAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGCCTAGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACAGACTCTACCGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTCAGGAGTATGACTCCCCAACTGCATTGCTTGAGGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCAAAATTTTGA 4434 0.3809 MNLATEFLQKPIFLHGLSIILHILLLLALLVSWALKKIKTCVVINETPNSTSTWFKVTKFSCIGFSSFNFVLFLFNYWYLSVWSEENVVTLFDLSLKTVTWCVVSVCFHKGFFFLFSSDQRKTKFPFFFRVWCVFYLFVSCYWFVIDIVVLYENHIELRVQCLVSVVVSFCVGFLFCYVGYCVKNESEEGDNRTLQEPLLNDNDNALELKETKGCDTVTPYSNAGILSLLTLSWVGPLIAFGNKKTLDLEDVPQLDSRDSAAGAFPIFRDKVEADCGAINRVTRLKLVKTLIIFLWKEILITGFLVLMKTCASYVGPYLIDSFVQYLSGKRLYKNQGYALVSAFIFSQLVRSLSQKHWFFKLEQLGVRIQAVLVTIIYEKALTLSCQSMQCHSSGDITNLITVDVERVGHFSYYLHDFWIVALEVTLALLILYKNLGLASIAALVTTIIIMLANLPLGSLQGKFQKKLMESKDTRMKSTSETLRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYSSAMTKFFYFGASTFVSVVTFGTCMLIGTPLESGKILSAIATFKVLQGPIYNLPDFISMIAKTKVSLDRIVSFLRLDDLQSDVVEKLPPGSSDTSIEVVDGNFSWDLSSPNPTLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGEQMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLRSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYDELLNIGTDFMELVGAHREALSTLESLDGGKASNEISTLEEEVNIEEENKEVQVDDKGEPKGQIVQEEEREKGKVGFSVYWKYITTAYGGAFVPFILLAQILYQALQIGSNYWMVWETPNSADVKPPVEGTTLIEVYVVLAIGSSLCMLVMELLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYEIGSFAFNVIILLGIIAVMSQIAWQVFIVFVPVIALSIWYQQYYLPAGRELSRLVGVSRAPIIQHFAETISGTSTIRSFNQQSRFLETNMKLVDRYSRPQFNMEVAIEWLGLRLDVLSTITFAFSLIFLISVPPGIINPGIAGLAVTYGLTINAIQYRVIWSICSLENNIISVERILQHTTIRSEPALVLEENRPDPSWPSYGKVDIRNLQVRYAPHLPLVLHGLTCTFHGGFKTGIVGRTGSGKTTLMQTLFRLVEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLESSVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIQEYDSPTALLEDKSSSFAKLVAEYTMRSNSKF 1477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03855 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 836 IPR027417 -
Trre13g03855 1477 Coils Coil 857 877 - -
Trre13g03855 1477 Pfam ABC transporter transmembrane region 917 1158 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03855 1477 Pfam ABC transporter transmembrane region 300 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03855 1477 FunFam ABC transporter C family member 5 877 1214 - -
Trre13g03855 1477 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Trre13g03855 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1462 IPR027417 -
Trre13g03855 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 221 1468 - -
Trre13g03855 1477 Gene3D ABC transporter type 1, transmembrane domain 876 1213 IPR036640 GO:0005524|GO:0016020
Trre13g03855 1477 SUPERFAMILY ABC transporter transmembrane region 915 1208 IPR036640 GO:0005524|GO:0016020
Trre13g03855 1477 CDD ABCC_MRP_domain2 1231 1451 - -
Trre13g03855 1477 Gene3D - 598 850 IPR027417 -
Trre13g03855 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1467 IPR003439 GO:0005524
Trre13g03855 1477 Pfam ABC transporter 632 766 IPR003439 GO:0005524
Trre13g03855 1477 CDD ABC_6TM_ABCC_D2 914 1206 IPR044726 GO:0140359
Trre13g03855 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 300 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03855 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 614 837 IPR003439 GO:0005524
Trre13g03855 1477 CDD ABCC_MRP_domain1 614 814 - -
Trre13g03855 1477 CDD ABC_6TM_ABCC_D1 301 588 IPR044746 GO:0140359
Trre13g03855 1477 Gene3D ABC transporter type 1, transmembrane domain 279 597 IPR036640 GO:0005524|GO:0016020
Trre13g03855 1477 FunFam ABC transporter C family member 3 1216 1468 - -
Trre13g03855 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 957 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03855 1477 ProSitePatterns ABC transporters family signature. 739 753 IPR017871 GO:0005524|GO:0016887
Trre13g03855 1477 SUPERFAMILY ABC transporter transmembrane region 291 593 IPR036640 GO:0005524|GO:0016020
Trre13g03855 1477 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Trre13g03855 1477 SMART AAA_5 641 814 IPR003593 GO:0016887
Trre13g03855 1477 Gene3D - 1216 1469 IPR027417 -
Trre13g03855 1477 FunFam ABC transporter C family member 5 599 846 - -
Trre13g03855 1477 FunFam ABC transporter C family member 10 283 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03855 Trre-Chr13 46753816 46759485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03855 1231 1476 Calmodulin-binding Proteins AT2G36910 29.020 1.57e-28 123