Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03854 ATGTTATTCTATGTTTCATCGTATAGCTTCTTTGTTTTGTCTTCTACTTCACTCATGAACCTTGCAACTGAATTTCTTCAAAAACCCATTTTTCTTCATGGGTTATCTATTATACTTCATATACTATTGCTTTTAGCACTTTTAGTTTCATGGGCTTTGAAAAAAATCAAAACTTGTGTTGTGATCAATGAGACACCAAATAGCACTAGCACTTGGTTTAAGGTCACAAAGTTTAGTTGCATTGGTTTTTCTTCTTTTAATTTTGTTTTGTTTCTCTTTAATTATTGGTATTTAAGTGTTTGGTCAGAAGAAAATGTTGTTACCCTTTTTGATTTATCTCTCAAAACAGTTACTTGGTGTGTTGTTTCTGTTTGTTTTCACAAAGGGTTCTTCTTTTTGTTCAGTTCAGATCAAAGAAAAACAAAGTTTCCATTTTTCTTTAGAGTTTGGTGTGTTTTTTATCTCTTTGTTTCTTGTTATTGGTTTGTGATTGACATTGTTGTTTTGTATGAAAATCATATTGAGTTAAGGGTTCAATGTTTGGTTTCTGTTGTGGTATCATTTTGTGTTGGTTTTTTGTTTTGTTATGTTGGGTATTGTGTGAAAAATGAGAGTGAAGAAGGTGATAATAGAACTCTTCAAGAGCCTCTTTTGAATGATAATGATAATGCTTTAGAGTTAAAAGAGACTAAAGGGTGTGACACTGTTACTCCTTATTCAAATGCTGGAATTTTGAGCCTTCTTACCTTATCTTGGGTGGGTCCACTTATAGCATTTGGCAATAAGAAGACCTTAGACCTTGAGGACGTTCCTCAGCTAGATAGTCGAGATAGTGCGGCCGGAGCTTTTCCAATTTTCAGAGACAAAGTTGAAGCTGATTGTGGTGCAATCAATAGAGTAACCAGACTTAAGTTGGTTAAGACATTGATAATCTTCTTGTGGAAAGAGATTCTTATCACTGGTTTTCTTGTACTGATGAAAACCTGTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAATACCTTAGTGGAAAAAGGCTATATAAGAATCAAGGTTATGCCTTGGTTTCTGCCTTTATATTTTCACAGCTTGTAAGATCCTTATCACAAAAGCATTGGTTCTTTAAGTTGGAGCAACTCGGAGTACGAATCCAAGCAGTGCTTGTGACTATTATATATGAAAAAGCCTTAACACTTTCTTGTCAATCAATGCAGTGTCACAGTTCTGGAGACATAACCAATTTAATTACCGTTGATGTCGAAAGAGTTGGTCATTTCAGTTATTACTTGCATGATTTTTGGATAGTAGCTTTGGAAGTTACATTGGCATTGTTGATTTTGTATAAAAACCTTGGACTTGCTTCCATTGCTGCTCTTGTTACAACCATCATTATTATGTTGGCAAATCTTCCATTGGGATCATTGCAAGGAAAGTTTCAAAAGAAGTTGATGGAGTCAAAAGATACTAGAATGAAGAGCACATCTGAAACTTTAAGGAACATGAGAATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACCGAGCTAAGGGATGCCGAACAAGGCTGGTTGAAAAAATTTCTTTATTCTTCAGCTATGACTAAATTTTTCTATTTTGGTGCATCTACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTCATAGGGACCCCACTTGAATCAGGAAAGATTCTGTCGGCAATAGCGACATTCAAGGTTCTTCAAGGGCCTATTTATAATCTTCCAGATTTCATTTCAATGATAGCAAAAACTAAAGTTTCTCTTGATAGGATCGTGTCGTTCCTTCGTCTTGATGACTTGCAGTCTGATGTTGTCGAAAAGCTTCCTCCGGGTAGTTCTGACACTTCAATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCACCTAATCCAACTTTGCAGAACATTAACCTCAAAGTTTTTCATGGCATGAAGGTTGCTGTTTGCGGTACAGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACAAATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCCTCAAGAAGGATCTGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGAATTAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTTTACCAAGATGCTGATATATACTTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTGTTGGGTGTTTTACGTTCAAAAACGGTGGTTTATGTTACTCATCAAGTGGAGTTTTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGATGAACTTCTTAATATTGGAACCGATTTCATGGAACTTGTTGGGGCACACAGAGAAGCTTTGTCTACACTTGAATCATTGGATGGAGGAAAAGCCTCTAATGAAATAAGTACATTAGAAGAAGAAGTAAATATCGAAGAGGAAAACAAAGAAGTGCAAGTAGATGATAAAGGCGAACCGAAAGGCCAAATTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTTTCGTACCGTTCATATTATTGGCTCAGATTCTTTATCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGTGTGGGAAACTCCCAACTCAGCCGATGTGAAGCCACCTGTTGAAGGAACGACTCTTATTGAAGTCTATGTTGTTTTGGCCATTGGAAGTTCTTTATGCATGCTTGTTATGGAATTGTTACTTGTTACAGTTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTGCATCTTTCGCGCCCCCATGTCATTTTTCGATTCTACTCCAAGTGGACGAATCCTTAATAGAGCTTCTACTGATCAAAGTGCAGTGGATACAGACATTCCTTATGAAATCGGCTCATTTGCCTTTAATGTGATCATTCTTCTAGGAATTATAGCAGTGATGTCTCAGATTGCATGGCAAGTTTTCATTGTCTTTGTACCTGTGATAGCACTCAGCATTTGGTATCAGCAATATTATTTACCAGCAGGCCGTGAACTGTCACGTTTAGTTGGAGTATCGAGAGCCCCAATCATTCAACACTTTGCGGAAACAATTTCTGGTACTTCAACCATTAGAAGCTTTAATCAACAGTCAAGATTTCTTGAAACAAATATGAAACTGGTTGATAGGTATTCTCGGCCACAGTTCAACATGGAGGTTGCTATCGAATGGTTAGGTCTCCGCTTAGATGTGTTGTCTACCATCACATTTGCCTTTTCCTTGATATTCTTGATATCGGTTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCTGTTACCTATGGTCTAACTATAAACGCGATACAATATAGGGTGATATGGAGTATTTGCAGCTTGGAGAACAATATTATATCGGTAGAAAGGATACTTCAACATACAACCATTCGTAGTGAGCCTGCCCTTGTTTTAGAAGAAAATAGGCCAGATCCTTCTTGGCCCTCATATGGCAAGGTTGATATACGGAACTTGCAGGTTCGATATGCTCCACATCTTCCACTCGTGTTGCATGGCCTGACATGCACATTTCATGGAGGATTTAAAACTGGCATTGTTGGTAGAACAGGTAGTGGGAAAACAACTCTTATGCAAACACTTTTCCGACTTGTTGAACCTACTGCTGGGGAAGTTATCATTGACAGCATCAACATCTCTACAATTGGACTGCATGATTTGAGGTCTCGACTAAGCATTATTCCGCAAGATCCAACAATGTTTGAGGGGACAGTGAGAAGTAATCTGGACCCCCTTGAAGAGTACACTGACGAACAAATCTGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTCGAAAGAAAGAAGGAAAGCTTGAATCTTCAGTTACTGAAAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGCCTAGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAACAAACTCTTAGGCAGCATTTCACAGACTCTACCGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTCAGGAGTATGACTCCCCAACTGCATTGCTTGAGGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCAAAATTTTGA 4488 0.3801 MLFYVSSYSFFVLSSTSLMNLATEFLQKPIFLHGLSIILHILLLLALLVSWALKKIKTCVVINETPNSTSTWFKVTKFSCIGFSSFNFVLFLFNYWYLSVWSEENVVTLFDLSLKTVTWCVVSVCFHKGFFFLFSSDQRKTKFPFFFRVWCVFYLFVSCYWFVIDIVVLYENHIELRVQCLVSVVVSFCVGFLFCYVGYCVKNESEEGDNRTLQEPLLNDNDNALELKETKGCDTVTPYSNAGILSLLTLSWVGPLIAFGNKKTLDLEDVPQLDSRDSAAGAFPIFRDKVEADCGAINRVTRLKLVKTLIIFLWKEILITGFLVLMKTCASYVGPYLIDSFVQYLSGKRLYKNQGYALVSAFIFSQLVRSLSQKHWFFKLEQLGVRIQAVLVTIIYEKALTLSCQSMQCHSSGDITNLITVDVERVGHFSYYLHDFWIVALEVTLALLILYKNLGLASIAALVTTIIIMLANLPLGSLQGKFQKKLMESKDTRMKSTSETLRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYSSAMTKFFYFGASTFVSVVTFGTCMLIGTPLESGKILSAIATFKVLQGPIYNLPDFISMIAKTKVSLDRIVSFLRLDDLQSDVVEKLPPGSSDTSIEVVDGNFSWDLSSPNPTLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGEQMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLRSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYDELLNIGTDFMELVGAHREALSTLESLDGGKASNEISTLEEEVNIEEENKEVQVDDKGEPKGQIVQEEEREKGKVGFSVYWKYITTAYGGAFVPFILLAQILYQALQIGSNYWMVWETPNSADVKPPVEGTTLIEVYVVLAIGSSLCMLVMELLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYEIGSFAFNVIILLGIIAVMSQIAWQVFIVFVPVIALSIWYQQYYLPAGRELSRLVGVSRAPIIQHFAETISGTSTIRSFNQQSRFLETNMKLVDRYSRPQFNMEVAIEWLGLRLDVLSTITFAFSLIFLISVPPGIINPGIAGLAVTYGLTINAIQYRVIWSICSLENNIISVERILQHTTIRSEPALVLEENRPDPSWPSYGKVDIRNLQVRYAPHLPLVLHGLTCTFHGGFKTGIVGRTGSGKTTLMQTLFRLVEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLESSVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIQEYDSPTALLEDKSSSFAKLVAEYTMRSNSKF 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03854 1495 ProSitePatterns ABC transporters family signature. 757 771 IPR017871 GO:0005524|GO:0016887
Trre13g03854 1495 FunFam ABC transporter C family member 5 617 864 - -
Trre13g03854 1495 CDD ABCC_MRP_domain2 1249 1469 - -
Trre13g03854 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1253 1485 IPR003439 GO:0005524
Trre13g03854 1495 SUPERFAMILY ABC transporter transmembrane region 933 1226 IPR036640 GO:0005524|GO:0016020
Trre13g03854 1495 Pfam ABC transporter 650 784 IPR003439 GO:0005524
Trre13g03854 1495 FunFam ABC transporter C family member 5 895 1232 - -
Trre13g03854 1495 CDD ABC_6TM_ABCC_D2 932 1224 IPR044726 GO:0140359
Trre13g03854 1495 SMART AAA_5 1277 1469 IPR003593 GO:0016887
Trre13g03854 1495 SMART AAA_5 659 832 IPR003593 GO:0016887
Trre13g03854 1495 Coils Coil 875 895 - -
Trre13g03854 1495 CDD ABCC_MRP_domain1 632 832 - -
Trre13g03854 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 632 855 IPR003439 GO:0005524
Trre13g03854 1495 SUPERFAMILY ABC transporter transmembrane region 309 611 IPR036640 GO:0005524|GO:0016020
Trre13g03854 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 318 598 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03854 1495 FunFam ABC transporter C family member 10 301 614 - -
Trre13g03854 1495 Gene3D ABC transporter type 1, transmembrane domain 894 1231 IPR036640 GO:0005524|GO:0016020
Trre13g03854 1495 Gene3D ABC transporter type 1, transmembrane domain 297 615 IPR036640 GO:0005524|GO:0016020
Trre13g03854 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 854 IPR027417 -
Trre13g03854 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1480 IPR027417 -
Trre13g03854 1495 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 975 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03854 1495 Pfam ABC transporter transmembrane region 318 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03854 1495 Pfam ABC transporter transmembrane region 935 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03854 1495 Gene3D - 1234 1487 IPR027417 -
Trre13g03854 1495 CDD ABC_6TM_ABCC_D1 319 606 IPR044746 GO:0140359
Trre13g03854 1495 FunFam ABC transporter C family member 3 1234 1486 - -
Trre13g03854 1495 Gene3D - 616 868 IPR027417 -
Trre13g03854 1495 Pfam ABC transporter 1268 1416 IPR003439 GO:0005524
Trre13g03854 1495 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03854 Trre-Chr13 46753762 46759485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03854 1249 1494 Calmodulin-binding Proteins AT2G36910 29.020 1.46e-28 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03854 - K05666 gmx:100818714 2227.98