Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03852 ATGGAGCAGTATGAAATTCTAGAACAGGTCGGTAAAGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAAGAAAAAGTATGTTCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACTCGTAGGTCAGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCGCAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATCGCCTATTGTGAAGGAGGAGATATGGCCGAAGCTATAAAAAAGGCCAATAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTCGTCCAGTTGCTGATGGCACTTGATTACTTACATGTAAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGACGATCTTGCTTCCTCAATTGTTGGTACTCCAAGTTATATGTGCCCGGAGCTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAGGCCAGCTTTTAAAGCTTTTGACATACAAGCATTGATTCACAAAATAAACAAGTCTATAGTAGCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGGGGGCTTGTTAAAACTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCTGGAGAGTTACTAAATCATCCACATCTTCAGCCTTACATCCTTAAAGTTCACCAAAAGCTAAATTGCCCCCGAAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAACTATGCAAGAAGAACTCGATTTGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGACAGATACTTGTCACTAAACAATCACAGGGCATTGAATCCCAGTATTTCTGGAACTGAACAAAGTTCTCAATATTCTACTCGAAGAGCTCAAGAATTATCCAATTGTTCAGAAGAGAATGACTTATCTGCTGGTGTTGTCCGTGGCCACTGCAATACTAACAAATCAAAAGCCATAAAGTCCTCAACTGGGGAAAGAACACCAAGACTTAGAGTAGCTAAGGAATCTGCTTCTGCCAGAAGGCAGACAACAGCACCGCCAAAGATATATGTTGCTGGTTCAAAGCGTGAATCACTACCGGTACCCCGCGCACCATCGGGTAAGTCTACCATGCCAACCCGGAGAGCATCCCTTCCGATTCCTACAAGAGGCAAGAACACAAGAAAATTCTACAACGATGTTGGTTACGTGGATTCTCCTGATGTTTCTGTTGATGCACCGCAAATTGACAGGATTGCAGAATTCGCAATGGCTTCCTACGAGGATCCATTCTTTCATGTTATTCGAAGATCATCATCGGCAGCCTCAGCCAAATGCTTTTCTAGTGCAGCAGGAAGTGCTGATTGCACAATCACAAAGGACAAGTGTACAATCCTGGTAGACAAAAAAGTTACTGTCCCTACTAGCACCGCTGAAGCTGGTACTGGTGTTCCATTTACAAAAGGCAGTGCCAGTGAATGCTCTAACTATGTTACAACTGGCATTTCAAGCCGCTCTTCATCTGAGTCGCGCGAGCATCGGTTTGACACCTCGTCCTACCAGCAACGTGCTGATGCGTTGGAGGGGCTGCTGGAGTTCAGTGCGAGGCTGCTACAACAACATAGGTTTGATGAGCTTGGTGTACTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACGGTGATATAAGGTTTCCTCATACACTTGCGTGA 1866 0.4373 MEQYEILEQVGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIAYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALIHKINKSIVAPLPTMYSSAFRGLVKTMLRKNPELRPTAGELLNHPHLQPYILKVHQKLNCPRRSTFPFQWPESNYARRTRFVEPESVSTLSDQDRYLSLNNHRALNPSISGTEQSSQYSTRRAQELSNCSEENDLSAGVVRGHCNTNKSKAIKSSTGERTPRLRVAKESASARRQTTAPPKIYVAGSKRESLPVPRAPSGKSTMPTRRASLPIPTRGKNTRKFYNDVGYVDSPDVSVDAPQIDRIAEFAMASYEDPFFHVIRRSSSAASAKCFSSAAGSADCTITKDKCTILVDKKVTVPTSTAEAGTGVPFTKGSASECSNYVTTGISSRSSSESREHRFDTSSYQQRADALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQNGDIRFPHTLA 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03852 621 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre13g03852 621 MobiDBLite consensus disorder prediction 366 380 - -
Trre13g03852 621 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Trre13g03852 621 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03852 621 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Trre13g03852 621 SUPERFAMILY Protein kinase-like (PK-like) 1 329 IPR011009 -
Trre13g03852 621 Gene3D Transferase(Phosphotransferase) domain 1 79 276 - -
Trre13g03852 621 MobiDBLite consensus disorder prediction 360 428 - -
Trre13g03852 621 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03852 621 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Trre13g03852 621 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 569 - -
Trre13g03852 621 CDD STKc_Nek 3 258 - -
Trre13g03852 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre13g03852 621 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03852 Trre-Chr13 46698844 46704023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03852 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.98e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre13g03852 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03852 K08857 - gmx:100810347 864.759