Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03851 ATGGTTAATGGTGATTATGCTTACCCTTCAACTATGAATGTTGAGAGTGTGCACCGTGTGGCAATACCGCCACCACAACCATTTTTAAAGTCACTAAAGTATTCTATGAAAGAAACATTTTTACCAGATGACCCATTGAGAAAGTTCAAGAACCAACCAGCTTCAAAGAAATTTGTTCTTGCTCTTCAACATTTTTTTCCAATTTTGGAGTGGGCCCCTCGGTACACAATTCAGTTCTTGAAATCTGACATAATTGCTGGGATCACCATTGCTAGTTTGGCTATTCCTCAAGGGATTAGTTATGCTAAGCTTGCTAATCTTCCTCCAATTCTTGGACTTTATTCAAGCTTTATACCACCATTGATTTATGCAATGATGGGTAGCTCGAGAGATTTGGCAGTGGGAACTGTGGCCGTTGGATCACTTCTAATGGCTTCCATGTTGGGTCGTGAAGTTAATGCAATTGAGAATCCAAAGCTTTTTCTTCACCTTGCTTTCACAGCTACATTCTTTGCTGGAGCTCTACAATTATCACTCGGCCTCTTTAGGTTGGGGTTTATTGTGGATTTTCTATCACATGCAGCAATAGTAGGATTCATGGGTGGAGCAGCCACAGTGGTTTGTCTTCAACAACTAAAATCAATTTTAGGACTTGAACATTTTACACATGAAGCTGATATTGTGTCAGTAATGAAATCTGTTTTCACACAAACTCGTGAGTGGAGGTGGGAAAGTGCAGTGTTGGGATGTTGCTTTATTTTTTTCCTCCTCGTCACAAGATACATTAGCAAACAACGACCGAAGTTCTTTTGGGTGTCAGCAATGACGCCACTATCGTCGGTTATATTGGGAAGTATGCTGGTTTATTTCACCCACGCTGAGAAGCACGGTGTTCAAGTGATAGGAGAATTGAAGAAGGGGCTTAATCCACCTTCAGCAACAGATTTAGTGTTTGTGTCACCATATATGGGCACAGCCATCAAAACTGGACTCATTATTGGTATAATAGCTCTTGCGGAAGGAATAGCAGTAGGAAGAAGCTTTGCAATGTTTAAAAATTACCATATTGATGGAAATAAAGAAATGATAGCTTTTGGTACCATGAATATTTTGGGTTCATTAACCTCTTGTTACCTCACAACAGGACCGTTTTCGCGTTCGGCCGTGAACTACAATGCCGGGTGCAAAACTGCGGCATCAAACATTGTAATGTCAATAGCAGTGATGTTGACATTATTATTCCTAACACCTTTGTTCCATTACACTCCTTTAGTGGTACTATCAGCCATTATTGTATCTGCAATGCTTGGACTTATAGATTATCAAGCAGCAATTCATTTGTGGAAAATTGACAAATTTGATTTTTTAGTATGCTTCAGTGCATATATTGGAGTTGTCTTTGGCAGTGTTGAAATTGGCTTAGTAATAGCAGTTGCATTATCTGTGCTTAGATTACTTTTATTTGTTGCAAGGCCTAGAACATTTGTTTTAGGAAACATTCCAAATTCTTCAGCTTACAGAAATGTGGAACATTATCCAATTGCAAATCATGTTCCTGGAATACTAATTCTTGAAATTGATGCACCAATTTTTTTTGCTAATGCAAGCTATTTAAGAGAGAGGATCACAAGGTGGATTGATGAAGAGGAAGAGAGACTTGAAGGTGCAGGGAAGACCAGTTTGGAGTATGTTATCGTGGATATGACCGCTGTTGCTAACATTGATACAAGTGGAATAAGCATGCTTGAAGAGTTCAAGAAGTCAATCGACCGAAAAGGGCTACAACTCGTTTTGGTCAACCCCGGAAGCGAGGTGACGAAGAAACTGAATAAATCAAAGTTCCTTGATGAAATAGGTCATAAATGGGTTTATGTGACAGTTGAAGAAGCTGTTGGAGTATGCAGCTTCATTCTTCATACACACAAGGCTAATCTCAAGAAAGATGAACCAGAAGGTTTGAACAGTGTGTGA 1971 0.3937 MVNGDYAYPSTMNVESVHRVAIPPPQPFLKSLKYSMKETFLPDDPLRKFKNQPASKKFVLALQHFFPILEWAPRYTIQFLKSDIIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMASMLGREVNAIENPKLFLHLAFTATFFAGALQLSLGLFRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKSILGLEHFTHEADIVSVMKSVFTQTREWRWESAVLGCCFIFFLLVTRYISKQRPKFFWVSAMTPLSSVILGSMLVYFTHAEKHGVQVIGELKKGLNPPSATDLVFVSPYMGTAIKTGLIIGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAFGTMNILGSLTSCYLTTGPFSRSAVNYNAGCKTAASNIVMSIAVMLTLLFLTPLFHYTPLVVLSAIIVSAMLGLIDYQAAIHLWKIDKFDFLVCFSAYIGVVFGSVEIGLVIAVALSVLRLLLFVARPRTFVLGNIPNSSAYRNVEHYPIANHVPGILILEIDAPIFFANASYLRERITRWIDEEEERLEGAGKTSLEYVIVDMTAVANIDTSGISMLEEFKKSIDRKGLQLVLVNPGSEVTKKLNKSKFLDEIGHKWVYVTVEEAVGVCSFILHTHKANLKKDEPEGLNSV 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03851 656 SUPERFAMILY SpoIIaa-like 515 634 IPR036513 -
Trre13g03851 656 ProSiteProfiles STAS domain profile. 511 634 IPR002645 -
Trre13g03851 656 Pfam Sulfate permease family 80 460 IPR011547 GO:0016020
Trre13g03851 656 NCBIfam sulfate permease 67 630 IPR001902 GO:0016020|GO:0055085
Trre13g03851 656 PANTHER SULFATE TRANSPORTER 30 635 IPR001902 GO:0016020|GO:0055085
Trre13g03851 656 Pfam STAS domain 512 630 IPR002645 -
Trre13g03851 656 Gene3D STAS domain 491 636 IPR036513 -
Trre13g03851 656 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Trre13g03851 656 FunFam Sulfate transporter 31 491 637 - -
Trre13g03851 656 CDD STAS_SulP_like_sulfate_transporter 512 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03851 Trre-Chr13 46654652 46663427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03851 10 644 Inorganic Solute Cotransporters AT4G02700 68.396 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03851 K17471 - gmx:100804670 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03851 13 46654652 46663427 Trre13g03851 13 46654652 46663427 ECH
Trre13g03851 13 46654652 46663427 Trre1g02990 1 25604675 25613451 PCT