Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03814 ATGCAAACTAGTACAATGAAAACAGAAAGAAGAAAAAACAAACGCTTCAATTATCTTTGTTTCTCAACTTTCATACACCCTTTCACTCCTCCTTCATCATCTCTTCTTCAAAATCAACAACAAATTGATCACAACCGTCCATCTCTCTCCACCGCTTCCGCCACGTCATCATCATCATTCATGATCAAAAACTTCAACACTCTCTACCAAAACCATAACCAAATCACCGAACCTGATTCCGAACCTCAACCCGAACCTCAACTTGCTGATTTCGCAACCGCCTTTGCCTCTAACCGTTTCTTTTTCTCTTCCCCCGGTCGTTCCAACTCCATCGTTGAATCTTCCTCTTCTTCCTCTTCATCCTCGTCGTTAACAGCCACCGTGCCGCCGCCGGTGAATGATTCCGATAACTACAAAAACAAAGCAATTTTCAACGGAAGTGTTGCCGTGCCAACTTACTCGCCGGATCCTTACATGGATTTCCGGCGGTCAATGCAAGAAATGGTGGAAGCACGACCGGAGTTGATGAACGATGTGAAATCCAATTGGAATACATTACACGAGCTTCTTCTTAGTTATCTTGCTCTTAACCCAAAAAGCACACACAAATTCATTCTCGGTGCTTTTTCTGATCTTATTGTTACTCTAATGTCATTATCTTCTTCTTCTTGTTCTTATCCACCACCGCCGCAGAATTCTAACTGTGGTGGCTGTGGCGGTGGATGCTAA 729 0.4348 MQTSTMKTERRKNKRFNYLCFSTFIHPFTPPSSSLLQNQQQIDHNRPSLSTASATSSSSFMIKNFNTLYQNHNQITEPDSEPQPEPQLADFATAFASNRFFFSSPGRSNSIVESSSSSSSSSSLTATVPPPVNDSDNYKNKAIFNGSVAVPTYSPDPYMDFRRSMQEMVEARPELMNDVKSNWNTLHELLLSYLALNPKSTHKFILGAFSDLIVTLMSLSSSSCSYPPPPQNSNCGGCGGGC 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03814 242 MobiDBLite consensus disorder prediction 32 53 - -
Trre13g03814 242 NCBIfam uncharacterized plant-specific domain TIGR01568 148 217 IPR006458 -
Trre13g03814 242 ProSiteProfiles OVATE domain profile. 150 215 IPR006458 -
Trre13g03814 242 Pfam Transcriptional repressor, ovate 154 216 IPR006458 -
Trre13g03814 242 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 39 216 IPR038933 GO:0045892
Trre13g03814 242 MobiDBLite consensus disorder prediction 112 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03814 Trre-Chr13 46281820 46282548 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre13g03814 Ovate 4.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03814 - - lja:Lj0g3v0324199.1 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03814 13 46281820 46282548 Trre13g03814 13 46281820 46282548 ECH
Trre13g03814 13 46281820 46282548 Trre1g03019 1 25917631 25918344 PCT