Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03812 ATGGATCAACCAGTATCCGAGAGAGTGTTTGAGGACCGAAATGACAATGACTGTTATCTTTGTAAACTTGGTGGTGACATACTTTGCTGCGACTGCTGTCCGTCGTCATTCCACAAAGAATGCTTGGGTATAGAAGAGCCACAAAGTGATAACTGGTACTGCCATTGGTGCTGTTGTAAATTTTGTGGAGAATTTGAACAAAGAGAAATCACAAATAATCCCAAATATGGACTTCTGCTAGTCTCTTGTCGTTCATGCAGGAGGAACTATCACAGAGCTTGTGTTGATAACATCGGTTATGAGACGGATCATTTCAATGGTGCATTCATATGTGGAAAAAAATGTCAAGAGATATATGAAAGACTTGAAATGCTTTTAAGCGAAAAGCATCAAATAGGTGATAATTTTGAATGCAATTTTTTGAATATATCACATGATACCGGCTCAAGTGCTTCAAAATTGGATGTTGCACTATCAATCCTTCAGGGGTATTTTGGACAACCTATTATCAATCACGGAGATCGAAACATTGATTTGATCCGAAGCATTGTATTTAGTCAGTGGTCGAACTCTCATTATTATAATTACGATGGATTTTTAACCGTAACTCTAGAGAAAGGGGATGAGATCATTTGTGTTGCAAATATCAGGGTGCATGAAAATCAAATTGCAGAGATGCCATACATTGCAACACACAATGCGTATACAAGCCAAGGAATGTGTCGTCGACTATTTGACGCCATTGAAGCGGCACTGAGCTATTTGAATGTTGAGATGCTGATTATTCCATCTTTAGATGAAATAGCAGGCTTTTGGGTTTCAAGTTTTCAATTTGAGCCCATTGATGAGGCCACAAAAATATTAATGAAAGAAAGAGTAGTGCCTTTTAATGATGTCACAATGTTGCAGAAGAAGATTCTTAAACATACCCTTTCTAGTGAAAATTTGAGTTTCATTGAGGTTTTCAACGTTATCAAAAATCAAAAAGAAAATGAACGAAAACAAGCTGATCACAAGATTATTGCAAAGGGTCGTGGTGGAAGCTCTTCCCGCCGCCGTGGTAGGCCACGGAAATCCACTCAAAAATGGTAA 1092 0.3819 MDQPVSERVFEDRNDNDCYLCKLGGDILCCDCCPSSFHKECLGIEEPQSDNWYCHWCCCKFCGEFEQREITNNPKYGLLLVSCRSCRRNYHRACVDNIGYETDHFNGAFICGKKCQEIYERLEMLLSEKHQIGDNFECNFLNISHDTGSSASKLDVALSILQGYFGQPIINHGDRNIDLIRSIVFSQWSNSHYYNYDGFLTVTLEKGDEIICVANIRVHENQIAEMPYIATHNAYTSQGMCRRLFDAIEAALSYLNVEMLIIPSLDEIAGFWVSSFQFEPIDEATKILMKERVVPFNDVTMLQKKILKHTLSSENLSFIEVFNVIKNQKENERKQADHKIIAKGRGGSSSRRRGRPRKSTQKW 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03812 363 MobiDBLite consensus disorder prediction 330 363 - -
Trre13g03812 363 ProSiteProfiles Zinc finger PHD-type profile. 15 60 IPR019787 -
Trre13g03812 363 PANTHER PHD FINGER PROTEIN 12 9 333 IPR042163 GO:0003714|GO:0045892
Trre13g03812 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 77 IPR013083 -
Trre13g03812 363 SMART PHD_3 17 58 IPR001965 -
Trre13g03812 363 SMART PHD_3 59 116 IPR001965 -
Trre13g03812 363 ProSitePatterns Zinc finger PHD-type signature. 18 57 IPR019786 -
Trre13g03812 363 SUPERFAMILY FYVE/PHD zinc finger 12 65 IPR011011 -
Trre13g03812 363 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 192 282 IPR016181 -
Trre13g03812 363 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03812 Trre-Chr13 46246721 46250085 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03812 18 307 PHD Transcription Factor Family AT1G05380 38.361 2.30e-64 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03812 - - psat:127129048 317.39