Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03809 ATGAATCAACCAATACCCGAGAGAGTGTTTGAGGACCGAAATGACCATGACTGTCATCTTTGTAAACTTGGTGGTGACATACTTTGCTGCGACTGCTGCCCTTCGTCATTCCACAAAGAATGCTTGGGTATAGAAGAGCCACAGAGTGAAAACTGGTACTGCCATTGGTGCAATTGTAAATTTTGTGGAGAATTTGAAGAAAGAGAAACTACAAATAATCCCAAATATGGACGTTTGCTAGTCTCTTGTCGTTCGTGTAGGAGAAAATATCACAGAGCTTGTGTTGATAACATCGATGATGAGACGGATCATTTCAACCGTGCATTCATATGTGGAAAAAAATGTCAAGAGACATATGAAAGACTTGAAATGCTTTTAAATGAAAAGCATCAAATAGGTGATAATTTTGAATGCAATTTTTTGAATATATCACATGATACCGGCTCAAGTGCTTCAAAATTGGATGTTGCACTATCAATCCTTCAGGGGTATTTTGGACAACCTATTATCAATCACGGAGATCGAAATATTGATTTGATCAGAAGCATTGTATTTAGTCAGTGGTCGAACTCTCATTATTATAATTACGATGGATTTTTAACCGTAACTCTAGAGAAAGGGGATGAGATCATTTGTGTTGCAAATATCAGGGTGCATGAAAATCAAATTGCAGAGATGCCATACATTGCAACACACGGTGCGTATACAAACCAAGGAATGTGTCGTCGACTATTTGACGCCATTGAATCTGCACTGAGCTATTTAAATGTTGAGATGCTGATTATTCCATCTTTAGATGAAGTAGCACGCTTTTGGGTTTCAAGTTTTCAATTTGAGCCCATTGATGAGGCCACAAAAATATTAATGAAAGAAAGAGTAGTGCCTTTTAACGATGTCACAATGTTGCAGAAGAAAATTCTTAAACACACCCTTTCTAGTGAAAATTTGAGTTTCATTGAGGTTTTCAATTTTGTGAAGAATCAAAAAGCAAATGAAATAAAACAAGTTGATCACAAGATTATTGCAAAGGGTCGTGGTGGAAGCACTTCTCGCCGCCGTGGTAGGCCACGAAAATCTACTTATAAATCGTAA 1092 0.3736 MNQPIPERVFEDRNDHDCHLCKLGGDILCCDCCPSSFHKECLGIEEPQSENWYCHWCNCKFCGEFEERETTNNPKYGRLLVSCRSCRRKYHRACVDNIDDETDHFNRAFICGKKCQETYERLEMLLNEKHQIGDNFECNFLNISHDTGSSASKLDVALSILQGYFGQPIINHGDRNIDLIRSIVFSQWSNSHYYNYDGFLTVTLEKGDEIICVANIRVHENQIAEMPYIATHGAYTNQGMCRRLFDAIESALSYLNVEMLIIPSLDEVARFWVSSFQFEPIDEATKILMKERVVPFNDVTMLQKKILKHTLSSENLSFIEVFNFVKNQKANEIKQVDHKIIAKGRGGSTSRRRGRPRKSTYKS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03809 363 ProSiteProfiles Zinc finger PHD-type profile. 15 60 IPR019787 -
Trre13g03809 363 SUPERFAMILY FYVE/PHD zinc finger 12 64 IPR011011 -
Trre13g03809 363 SMART PHD_3 59 116 IPR001965 -
Trre13g03809 363 SMART PHD_3 17 58 IPR001965 -
Trre13g03809 363 MobiDBLite consensus disorder prediction 344 363 - -
Trre13g03809 363 ProSitePatterns Zinc finger PHD-type signature. 18 57 IPR019786 -
Trre13g03809 363 PANTHER PHD FINGER PROTEIN 12 10 334 IPR042163 GO:0003714|GO:0045892
Trre13g03809 363 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 192 285 IPR016181 -
Trre13g03809 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 76 IPR013083 -
Trre13g03809 363 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03809 Trre-Chr13 46199598 46202734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03809 18 307 PHD Transcription Factor Family AT1G05380 38.689 8.29e-64 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03809 - - psat:127129048 324.324