Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03805 ATGTATGCTTCTGTAACAGATAGGGGATATGAAGGGAGTTGTGTTGGAGGTTCAGGAGCTATTTTGATTCCGAGTCGTTTTGTTTGGCGTCATGAAGGAAGAAGAGTGTTTCTCACTGGTTCTTTCACCAGATGGTCGGAACATATTCCTATGTCTCCGATGGAAGGATGCCCTTCTGTGTTTCAGGTTATTTGCAGCTTGATGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGTGGCATGATATTGAGCTGCCAATTGTAAGTGGGACCTATGGAGTAGTAAATACTATTTACGTAGTGAGAGAACCAGATATTTTACCTGCCATCTTAAGTGCTGAAACACCCAGTAGGTCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCGGACATTGCTGTTTCTCCAGGTTTATTGTTTCTTACAGTTACCACTGCCATGGCTCAAAACGTGCCTACCAAAAGGGCGGTATTGGTAGGCACCGAGTACTATCTTGACAATAGAAAATTAAGAGGATGTGCCGGAGATGCTATAAAGATGAGAGACGCTTTGATAAGTGTTACTATGGGTTCAATATTCAACATACGCAGCTGA 606 0.429 MYASVTDRGYEGSCVGGSGAILIPSRFVWRHEGRRVFLTGSFTRWSEHIPMSPMEGCPSVFQVICSLMPGYHQYKFNVDGEWWHDIELPIVSGTYGVVNTIYVVREPDILPAILSAETPSRSHMEVDNDVFGHADIAVSPGLLFLTVTTAMAQNVPTKRAVLVGTEYYLDNRKLRGCAGDAIKMRDALISVTMGSIFNIRS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03805 201 Gene3D - 115 195 - -
Trre13g03805 201 SUPERFAMILY E set domains 23 105 IPR014756 -
Trre13g03805 201 CDD E_set_AMPKbeta_like_N 26 104 - -
Trre13g03805 201 Pfam Glycogen recognition site of AMP-activated protein kinase 23 108 IPR032640 -
Trre13g03805 201 PANTHER 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT 23 117 - -
Trre13g03805 201 FunFam Sucrose nonfermenting 4-like protein 20 104 - -
Trre13g03805 201 Gene3D Immunoglobulins 20 105 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03805 Trre-Chr13 46156613 46160300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03805 27 113 Protein tyrosine phosphatase (PTP) family AT3G01510 35.556 1.10e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03805 - - gmx:100790062 201.445