Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03791 ATGGATCTTCGCACGCGTAATATGAAAAGAAAACTCGATTTCACTGAACAAGATGATGAACCAACAAACAATTCTCACCGTCGTCGTCTAGATCTTCCCGCCGATATTTCCAAACGGATTCATTTCCTCAACTCTGCTTTTTCATCATCTGATTCAGATCGTTCTTCTGCGAGAAGTGCTATCTTCGTTCTCACCGAGTTCGCTAAAGACGAAGATATTGTGGATGTTATAGTGGATTGTGGTGCTGTTCCTGCTTTGGTGAAGGTTCTGGAGACGGCGAACACGGTGGTGATTGGTGACGGTGATTGTCATGCCGATCGTCACCGGTATGAAATGGAGAAAGACTGTGCGTTCGTCCTTGGTCTACTTGCTGTCAAGTCAGAGTATCAACAACTTATTGTTGATGCTAGAGCCTTGCCCTATCTTGTGGGATTGTTAAAGAGATCCAAAAGCCCTATCATTTCTCAAGCACTTTTTTCGGGTCTTCTTAGAAAAACAGCCGACACAATAACCAATCTCGCCCATGAAAATACCAGCATCAAGACCCTTGTCAGGGTGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGATACAAAGGTACAAAGAGCAGCTGCAGGGGCATTGCGAACTCTTGCATTTCAAAATGCTGACAATAAAAATCAGATTGTTCAATGCAATGCGTTGCCCACTCTTGTACTGATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCTGTTGGTGTGATCGGAAATCTGGTCCACTCTTCGCCTGAAATTAAGAAAGAGGTTCTTCTAGCCGGGGCCTTACAGCCAGTTATTTGCTTATTAAGTTCATGCTGTTTGGAGAGCCGACGTGAAGCAGCTCTTTTAATTGGTCAATTTGCTACAACTGATTCAGATTGCAAGATTCACATTGGCCAAAGAGGGGCTATAAACCCCTTAATTGAAATGCTTGAGTCTTCAGATTTACAGCTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCCCAGGATTCTCACAATCAAGCTGGTATTGCTTACAATGGAGGTATAGAGCCTCTGCTGAAGCTTCTTGGCACAAAGAATGCTTCTTCTGTCCAACACAATGCATCTTTTGCTCTTTATGCTCTTGCGGATAATGAGGACAATGTTGCAGTTATTATTAAGGCCGGTGGTTTTCAAAAACTGCAGCAGGGGCATTTCAATGCTCAGCCCACTCAAGAGTGTGTAACAAAGACGTTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAACACATGCTATATGTTATGCGCACTGGGGAAAAGGGTGTTCGAATACGTGTAGTTCTTGCTCTTGCACATTTATGTTCCCCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGAGCTTCTTCAATCCACAAACCAAAAGCAGAAGGGTGAAGCTTCAGCAGCGCTTCACGCAATGGCTGCCAAAGGAATGCGTGCCTCTATTCGTAATCCTGCTCCTACATCACCAACCCCCCAGGTTTACTTGGGTGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCATAGTTGAAGGAAAAAGATTTCATGCTCATAGGTCTTGTTTACTTTCTTCTGATATATTTCGTGCAATGTTTGATGGAGGTTATAGGGAAAAGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTGGATGTTGATTTGGATGTTGCTGTGGACCTCCTTAAAGCTGCAGATCAATATCTTCTTGACGGTCTTAAGCGTATTTGTGAATATACCATTTCTAAGGGTATTTCTGTGGAAAATGTTTCACTACTGTACGCGATGTCAGAGACTTTCAATGCTACATCATTAAGAGATTCATGCATACTCTTTGTCCTGAAACAATTTGATAGCTTGAGTTCCAAACCATGGTATGCTCACTTTATTCGTTGCATTGTGCCTGACATTCACAAATTCTTCTCAACTTTACTTACCACTAAATTTGGTCTCGTGGATCCTTAG 2094 0.4183 MDLRTRNMKRKLDFTEQDDEPTNNSHRRRLDLPADISKRIHFLNSAFSSSDSDRSSARSAIFVLTEFAKDEDIVDVIVDCGAVPALVKVLETANTVVIGDGDCHADRHRYEMEKDCAFVLGLLAVKSEYQQLIVDARALPYLVGLLKRSKSPIISQALFSGLLRKTADTITNLAHENTSIKTLVRVEGGIPPLVELLEFNDTKVQRAAAGALRTLAFQNADNKNQIVQCNALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKKEVLLAGALQPVICLLSSCCLESRREAALLIGQFATTDSDCKIHIGQRGAINPLIEMLESSDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLKLLGTKNASSVQHNASFALYALADNEDNVAVIIKAGGFQKLQQGHFNAQPTQECVTKTLKRLEEKMQGRVLKHMLYVMRTGEKGVRIRVVLALAHLCSPDDRKTIFIDNNGLELLLELLQSTNQKQKGEASAALHAMAAKGMRASIRNPAPTSPTPQVYLGEEYVNNPKLSDVTFIVEGKRFHAHRSCLLSSDIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAVDLLKAADQYLLDGLKRICEYTISKGISVENVSLLYAMSETFNATSLRDSCILFVLKQFDSLSSKPWYAHFIRCIVPDIHKFFSTLLTTKFGLVDP 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03791 697 SMART BTB_4 532 628 IPR000210 GO:0005515
Trre13g03791 697 Gene3D - 40 160 IPR011989 -
Trre13g03791 697 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 690 IPR044282 -
Trre13g03791 697 SUPERFAMILY ARM repeat 427 501 IPR016024 -
Trre13g03791 697 Pfam Armadillo/beta-catenin-like repeat 182 216 IPR000225 GO:0005515
Trre13g03791 697 Pfam Armadillo/beta-catenin-like repeat 219 258 IPR000225 GO:0005515
Trre13g03791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 272 IPR000225 GO:0005515
Trre13g03791 697 Pfam BTB/POZ domain 524 625 IPR000210 GO:0005515
Trre13g03791 697 SUPERFAMILY ARM repeat 42 404 IPR016024 -
Trre13g03791 697 Gene3D Potassium Channel Kv1.1; Chain A 523 666 IPR011333 -
Trre13g03791 697 SUPERFAMILY POZ domain 523 625 IPR011333 -
Trre13g03791 697 Gene3D - 287 509 IPR011989 -
Trre13g03791 697 ProSiteProfiles BTB domain profile. 532 598 IPR000210 GO:0005515
Trre13g03791 697 Gene3D - 161 286 IPR011989 -
Trre13g03791 697 SMART arm_5 70 125 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 344 385 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 460 500 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 261 301 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 219 259 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 126 175 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 303 343 IPR000225 GO:0005515
Trre13g03791 697 SMART arm_5 177 217 IPR000225 GO:0005515
Trre13g03791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 223 IPR000225 GO:0005515
Trre13g03791 697 MobiDBLite consensus disorder prediction 1 30 - -
Trre13g03791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Trre13g03791 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 398 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03791 Trre-Chr13 46045279 46050032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03791 190 402 U-box Gene Family AT1G23030 30.374 5.53e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre13g03791 BTB 1.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03791 - - csin:114287792 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03791 13 46045279 46050032 Trre13g03791 13 46045279 46050032 ECH