Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03773 ATGAGCTATCAAATGAATGGTGAAAATGCAAGAAGAGATTTGAAAAGAAAGCTCCCCCAAATGGATCGAGGGCATGAGCCGAGATCTTATAATATGAATTCAACACCTTATGATAGAAATGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACATGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGAGAATCCTTCAATGATTACATTCCGAATAAAAGATATACTCCCAAGCAAGCAATTCAGCAACAGAGAGCTTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACCCGTTACTATCAATTATCAGATTGGAAAAAAGAAGGGATTGGCCATGTAAAGATAAGATGCAAAGGAAGAGATTCTGTGCCTGATGATGAATCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTTGCTCTCGAAGACCAAACACAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGTTATATGATTGTTAGTTTTCTTGTGCGTACAGAATCAATTCCGGTCACTGAGGCGATAAATAAATTTGCTCAGGCACGTCCCCCTGGAATTTACAAGCAGGATTATATTGACGCCCTGTACATGTTGTTTAATGAAAAGAAGCCTGAAAATCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCCTCCCTGACCCTGACTATCATGGCGTGTCTGTGTCAGCTACAGACAATTATACAGACATTTTGAAGCAGGAGAATATTGTGAGGAATGAAGTAATGACAAATGATGATGTTTTGGGAGATCCTATTCCTTCAAACCAGCTTCGTCCAATGCAAGAAGTTTGTTATCAACTGCTCAAGATGGGCAAAGGGGGAAAAGGCTTTCCCGGATCACACCCTGTTTCTCTGAACAGGGAAAACTTGCAACTCTTAAGACAGAGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATTTGATTGACAGAAAATTTCTTTTCCAAAGGATCTGTATGCGGTTTCCTTGCAGATACTCAAATGGGGGTACACCCGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCACATACACATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAACCAAGTCTCTCTGGCAGAGATACCATTCTATGAAAGGTGGAAATTACTGGAGAAAGAAGTAATTGAACCCCGGAACATGGAACGAGAAGCCCTTTCCAAGAGTATAAGTCCTTATTATAGATATGACTTGGAACCATTTGGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCGTATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCGGAGATGAACTCTGTCGATTTTCATTTTGAGGTGGGAGCCGGTGATCGACCCCTGCTTTTTCTGTTTGAACGCGGAAAGAGGAAATTAATGGAAGGGAATGCTGTTATTTTTAAAGATGGAACGGATATTTGTTCCTATTCAGGAAGGATTATTGAGTGCTACTGGGATGCTGCGGAGCATCACTGGGTCTGTATGCGGATAAGAGCCGATAAAGCAACTCCAAATGACATCAATACTTACAGAAAGGTAATGCGAAGCATAAAGGATAATATCACTGAAGAGGTCCTGTTGAATGAGATTAGTGAGATCATTCGGCTACCCTTGTATGCAGATAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCACGACGCAAGTCAAGGATATGTGTGAAAAATCTCCCTAAATATGTTGCAGAGGATCGACTAAGAGAATTATTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTATGCGTACCAAAAACGGAAAAAGTCGTCAATTCGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCAAGAAGCAATTCGTTATTTTAATAAATCTTACCTTGACACACTTAGAATTATTTGCGAGGTGGCTCAAAAACTCGGTGATGCGAATCTCCCTCGTCCATGGAGTCGACATTCAACGAAAAAAGACACTAAAGCGGTGATCACCTCAGATGCGAATGATCATCCTAGAGGTAAAGGAAAAGGAGACAATGCTAAGTACATTGATGATCCAAAGCTTAAAGATTTTCTTCAGGTTATGCAACCTCGGGTTAAGTCTAAGTTGTGGGGAAATGATACTTCATTTGCATCCAATGATAATGGTAACGGACAAGCAATATTGAATAAGAAGACCGAAGAAGGTACATTGGTTGCAAACCATCCTATCTTAAGCGAGGACTTACAAGTAGATGATGGAATACCGCCAAATAATAATCCTCAATCCGACAAGTCACGTGATGGATTAATGTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAATGGTCTGATTCTGATGATAGCAGTGATGATGAAAATGACGATGAAAACAGTGATTCGGAATCTGCTGACGAGGATGACAAAGATAACCATAGTCATGCTAGTCAACATGAAGAAACCCCAAGAAGTGGTGCTCAAGAGTTAGAAGTAGTAGAAGGGAAAGAAGATATTTTTCAAGAGGATGCTGCCAATGATAAATCTCAGGTTAATGCAACTGAGGAGGAGCGGCAATCATCAAATCCTGAAGATAAGAAACAAGTTTCTGAGTCGTGTCGACTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAGCATTTCGGTCAGTTTGGTAGTGTCTCACAGGTTCATTTAGTTGTTGATAAGGAGACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCGGAATTTGCAACCAGGGCGCTAGAAGAGTCGGACAATTCAATCTTCCAGGGGAGATTATTGCATGTCATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAATGTCTCCAAAGACCAAGGCTCTAAAACTCTCAAAGAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGTCCTGATACAGTTGTTGAAAACGTTGCTCGGAAATATGGTGTTAGTAAGAGTGATTTTATGGATCGAGAAGCTAATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAGAAAGCTGGAGTGAATGTGGAGGCTTTGGAGGAGCTTGCCAAGGGTAAAGTTGATGGCGTAAAAAGAAGTAACCATGTAATTTTAGTGAAAAATTTGCCCTATGGTTCTACCGAAAATGAACTCGCAAATATGTTTGGGAAATTTGGTAGTTTGGAAAAAATAATTCTTCCCTCAACAAAAACATTGGCCCTGGTTGTTTTCCTTGAACCAGCAGAAGCTAAAGTTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCAACGTTCTTATCCCAAAATCAACATCTGACGATAATGAGATGAATAGTGGAATTGGTGAAAAGGATGTCAAGCGGCAGATATTGGAGAAAGACGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTCAATTTCAAGACAACTGATGAGAGTTTAAAGGAGCATTTAAGTAAACACATGAAAGAGGGACGAATTTTGAGTGTCAAGGTGAAAAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACCGCTACAAGTGTTTGCAACAATTTACAGGGGACTGTTTTGGACAGTCATGCTCTTATTTTACAACTTTGTCATGCAAAGAATGATGGTAAAGTACAAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCGATGAAGTTAGGAAATCATAGAGGATTTGCGTTTGTGGAATATGTTACTCAGCAGGAGGCACAAAATGCAATTACGGCACTCTCAAGTACTCACTTGTATGGAAGACATCTGGTGATAGAGAGAGCAAAAGAAGGCGAGAGTCTGGAGGAACTGCGGGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATGCTAACTTATCCAAGAAAAGGAAGGCCATCAGTATGTTTGATGAAGAAAATATGAAGTTTGGAAGGTTTGATTAG 4425 0.4038 MSYQMNGENARRDLKRKLPQMDRGHEPRSYNMNSTPYDRNALPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNKRYTPKQAIQQQRALGRELGLVIDLTNTTRYYQLSDWKKEGIGHVKIRCKGRDSVPDDESVQKFCNEVLDFCSRRPNTKKYILVHCTHGHNRTGYMIVSFLVRTESIPVTEAINKFAQARPPGIYKQDYIDALYMLFNEKKPENLVCPQTPEWKSLPDPDYHGVSVSATDNYTDILKQENIVRNEVMTNDDVLGDPIPSNQLRPMQEVCYQLLKMGKGGKGFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFQRICMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLAEIPFYERWKLLEKEVIEPRNMEREALSKSISPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGDRPLLFLFERGKRKLMEGNAVIFKDGTDICSYSGRIIECYWDAAEHHWVCMRIRADKATPNDINTYRKVMRSIKDNITEEVLLNEISEIIRLPLYADRIQRDIKAHQHMVSSRRKSRICVKNLPKYVAEDRLRELFSQKGEITDVKLMRTKNGKSRQFAFIGFRTDQEAQEAIRYFNKSYLDTLRIICEVAQKLGDANLPRPWSRHSTKKDTKAVITSDANDHPRGKGKGDNAKYIDDPKLKDFLQVMQPRVKSKLWGNDTSFASNDNGNGQAILNKKTEEGTLVANHPILSEDLQVDDGIPPNNNPQSDKSRDGLMSDMDYFKSKVTTEWSDSDDSSDDENDDENSDSESADEDDKDNHSHASQHEETPRSGAQELEVVEGKEDIFQEDAANDKSQVNATEEERQSSNPEDKKQVSESCRLFVRNLPYTTTEEELEEHFGQFGSVSQVHLVVDKETKRSKGIAYIHFSVPEFATRALEESDNSIFQGRLLHVMPAIPRHSNNEENNVSKDQGSKTLKERREEERKAAEASGDTRAWNSLFMRPDTVVENVARKYGVSKSDFMDREANDLAVRIALGETQVISETKNAFKKAGVNVEALEELAKGKVDGVKRSNHVILVKNLPYGSTENELANMFGKFGSLEKIILPSTKTLALVVFLEPAEAKVAFRGLAYKRYKDAPLYLEWAPSNVLIPKSTSDDNEMNSGIGEKDVKRQILEKDVERISDMDIDPDRIEARSLFVKNLNFKTTDESLKEHLSKHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNNLQGTVLDSHALILQLCHAKNDGKVQKKVEKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKLGNHRGFAFVEYVTQQEAQNAITALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDANLSKKRKAISMFDEENMKFGRFD 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03773 1474 CDD RRM5_RBM19_like 1252 1332 IPR034423 -
Trre13g03773 1474 Gene3D DNA ligase/mRNA capping enzyme 255 500 - -
Trre13g03773 1474 FunFam mRNA capping enzyme, putative 264 498 - -
Trre13g03773 1474 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 230 IPR029021 -
Trre13g03773 1474 FunFam mRNA capping enzyme family protein 38 250 - -
Trre13g03773 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 632 709 IPR000504 GO:0003723
Trre13g03773 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1353 1420 IPR000504 GO:0003723
Trre13g03773 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1253 1327 IPR000504 GO:0003723
Trre13g03773 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 938 1008 IPR000504 GO:0003723
Trre13g03773 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1133 1194 IPR000504 GO:0003723
Trre13g03773 1474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 634 698 IPR000504 GO:0003723
Trre13g03773 1474 MobiDBLite consensus disorder prediction 815 829 - -
Trre13g03773 1474 Gene3D - 1248 1341 IPR012677 -
Trre13g03773 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 936 1014 IPR000504 GO:0003723
Trre13g03773 1474 FunFam RNA-binding motif protein 19 628 730 - -
Trre13g03773 1474 Pfam Dual specificity phosphatase, catalytic domain 93 210 IPR000340 GO:0008138|GO:0016311
Trre13g03773 1474 SUPERFAMILY Nucleic acid-binding proteins 503 616 IPR012340 -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 809 892 - -
Trre13g03773 1474 SUPERFAMILY RNA-binding domain, RBD 1346 1432 IPR035979 GO:0003676
Trre13g03773 1474 CDD RRM6_RBM19_RRM5_MRD1 1351 1425 - -
Trre13g03773 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1131 1203 IPR000504 GO:0003723
Trre13g03773 1474 MobiDBLite consensus disorder prediction 1027 1047 - -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 830 849 - -
Trre13g03773 1474 Gene3D - 1124 1227 IPR012677 -
Trre13g03773 1474 Gene3D - 1342 1450 IPR012677 -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g03773 1474 SMART rrm1_1 1252 1330 IPR000504 GO:0003723
Trre13g03773 1474 SMART rrm1_1 633 705 IPR000504 GO:0003723
Trre13g03773 1474 SMART rrm1_1 1352 1423 IPR000504 GO:0003723
Trre13g03773 1474 SMART rrm1_1 1132 1199 IPR000504 GO:0003723
Trre13g03773 1474 SMART rrm1_1 937 1010 IPR000504 GO:0003723
Trre13g03773 1474 FunFam Multiple RNA-binding domain-containing protein 1 1122 1224 - -
Trre13g03773 1474 CDD RRM1_MRD1 632 707 - -
Trre13g03773 1474 SUPERFAMILY RNA-binding domain, RBD 1128 1216 IPR035979 GO:0003676
Trre13g03773 1474 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Trre13g03773 1474 MobiDBLite consensus disorder prediction 904 933 - -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 1014 1047 - -
Trre13g03773 1474 FunFam Multiple RNA-binding domain-containing protein 1 1345 1450 - -
Trre13g03773 1474 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 219 IPR020422 GO:0006470|GO:0008138
Trre13g03773 1474 MobiDBLite consensus disorder prediction 869 892 - -
Trre13g03773 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1251 1334 IPR000504 GO:0003723
Trre13g03773 1474 FunFam Nucleotide/nucleic acid binding protein 1247 1342 - -
Trre13g03773 1474 Gene3D Protein tyrosine phosphatase superfamily 18 235 IPR029021 -
Trre13g03773 1474 SUPERFAMILY RNA-binding domain, RBD 1239 1337 IPR035979 GO:0003676
Trre13g03773 1474 CDD Adenylation_mRNA_capping 276 501 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre13g03773 1474 Gene3D - 542 608 IPR012340 -
Trre13g03773 1474 SMART dsp_5 75 215 IPR020422 GO:0006470|GO:0008138
Trre13g03773 1474 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 291 501 - -
Trre13g03773 1474 SMART rrm2_1 937 1010 IPR003954 GO:0003676
Trre13g03773 1474 SMART rrm2_1 633 705 IPR003954 GO:0003676
Trre13g03773 1474 CDD RRM4_RBM19_RRM3_MRD1 1131 1202 - -
Trre13g03773 1474 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Trre13g03773 1474 MobiDBLite consensus disorder prediction 850 868 - -
Trre13g03773 1474 FunFam mRNA capping enzyme family protein 499 608 - -
Trre13g03773 1474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1351 1427 IPR000504 GO:0003723
Trre13g03773 1474 MobiDBLite consensus disorder prediction 719 751 - -
Trre13g03773 1474 SUPERFAMILY RNA-binding domain, RBD 928 1025 IPR035979 GO:0003676
Trre13g03773 1474 CDD RNA_5'-triphosphatase 45 211 - -
Trre13g03773 1474 SMART ptp_7 104 215 IPR003595 -
Trre13g03773 1474 SUPERFAMILY RNA-binding domain, RBD 629 716 IPR035979 GO:0003676
Trre13g03773 1474 Pfam mRNA capping enzyme, C-terminal domain 538 599 IPR013846 -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 9 24 - -
Trre13g03773 1474 PANTHER MRNA-CAPPING ENZYME 37 613 - -
Trre13g03773 1474 Gene3D - 612 753 IPR012677 -
Trre13g03773 1474 Gene3D - 902 1051 IPR012677 -
Trre13g03773 1474 MobiDBLite consensus disorder prediction 717 751 - -
Trre13g03773 1474 Pfam mRNA capping enzyme, catalytic domain 302 500 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03773 Trre-Chr13 45813584 45833373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03773 31 621 Protein tyrosine phosphatase (PTP) family AT3G09100 62.292 0.0 779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03773 K14787 - gmx:100798742 1142.87