Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03752 ATGAGGGTGGTGAGAAGTTGGAAAGGACACGATGATCGGTATCTACAAAACCCAGTCGTAGCTAGAACCAAGGGGCGTGGCGGTGGCGGAAATGTTGCGTGTAGGGCTGGTAACAAAAGGAAACCAAGTCAATGTGGTTTTTGTCAGAATATTGGTCATAATCAGCAAACTTGTCCTGCATTAAAAAAGCAGAAAACCCTTGTTGACAAAAGCAGCACAATGAATGATATTAATGATGATGATGATGATGATGCTGATTATGATGATGATAATGATGGAGGTGGTGATGATGATGATGGAGATGGAGTTGGTAAATCACATAGCATTGATTGTTGGAAGTTTGGTTTCATTGTTATGGATGGAAATAGAACCCTTTTCGGAACGTTAAGTGGAAATACTCGTGAGGTGCTTTATAAATCTACTGTTGATCCAAAGAAACATGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGACCGTCGTAGAATAGTAAAACGGCACAATTACTTTAAGAAGACTGCAGAACTTGCTACTCTGTTTTATATCAACCCTGCTACTAGTCAACCTAATGTTTCTGGACTCATACTTGCTGGTTCGGCCAATTTCGAGATTGGGTTGAGCCAGTCAGATATGTTCGATCCCCGTTTGCAAGCAAAAATATTGAAAGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCCATTGGATTATCTGCGGAGATTTTATCTAATGTGAAGTTCATACAAGAGAAACGCTTGTTAGGAAAATATTTCGATGATATAAGACAAGAACCCGGGAAATATGTTTATGGATTTGATGACACATTGAAGGCCCTAGAGATGGGTGCTGTTGAAACACTTATTGTATGGGAGGATTTGGATATTAATAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTAAAGAAGGAACAAGAAGCTGATCAAAGCAACTTTCGCGATGTCGCTACCTCTGCAGAGTTGGAGGTTGTGGAGAAGATGCCGTTACTTGAGTGGTATGCAAATGAGTATAAAAAAATTGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCAATATTTTGTAGAGACTTTGGTGGTATTGGAGGGAAGTTTTCTAAATTGAACCTAAAACTAAAACCAATTGAAGACGACGTCATTTGTGGTACAATTGGTTACATAGCACCGGAGTATTATGAAACCAATACTTACACTGATAAATGTGACGTTTACTCTTTTGGTATGGTTCTACTAAATGTAGCATGCAAAGACTTAAACCTTAGGATCATGGATAAGATGGAAATGTTACCCTTGGAGGAGGAAATTGCGTTTTTAGAAGACCATAATGCGGTTTTAGATGAGAATATACTTGGAGGATATAACTTTTGGGACAAGATCCTAGATGCTGATATTATTGATCCCATTCTTATGAGATTGATTGCTCTACCATGTTTGGAAGTGTTCATGGATATTGCGAAAAGATGCTTGAAATCTGATCCAAATGAAAGACCAGCAATGGGTGAAGTTGAGGTTGAACTTGAGCATGCTCTGGCACTGCAGGAGGAGGAAGAAATGTTTTGGAAAGAGTAA 1620 0.3938 MRVVRSWKGHDDRYLQNPVVARTKGRGGGGNVACRAGNKRKPSQCGFCQNIGHNQQTCPALKKQKTLVDKSSTMNDINDDDDDDADYDDDNDGGGDDDDGDGVGKSHSIDCWKFGFIVMDGNRTLFGTLSGNTREVLYKSTVDPKKHGRGGQSALRFDRRRIVKRHNYFKKTAELATLFYINPATSQPNVSGLILAGSANFEIGLSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIGLSAEILSNVKFIQEKRLLGKYFDDIRQEPGKYVYGFDDTLKALEMGAVETLIVWEDLDINRYVLKNATTGEIVIKHLKKEQEADQSNFRDVATSAELEVVEKMPLLEWYANEYKKIGCSLEFVTNKSQEGSIFCRDFGGIGGKFSKLNLKLKPIEDDVICGTIGYIAPEYYETNTYTDKCDVYSFGMVLLNVACKDLNLRIMDKMEMLPLEEEIAFLEDHNAVLDENILGGYNFWDKILDADIIDPILMRLIALPCLEVFMDIAKRCLKSDPNERPAMGEVEVELEHALALQEEEEMFWKE 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03752 539 Gene3D eRF1 domain 2 112 246 IPR042226 -
Trre13g03752 539 SUPERFAMILY Protein kinase-like (PK-like) 394 522 IPR011009 -
Trre13g03752 539 Gene3D Transferase(Phosphotransferase) domain 1 387 526 - -
Trre13g03752 539 Pfam Protein kinase domain 394 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03752 539 MobiDBLite consensus disorder prediction 69 102 - -
Trre13g03752 539 SUPERFAMILY L30e-like 246 380 IPR029064 -
Trre13g03752 539 Pfam eRF1 domain 3 249 380 IPR005142 -
Trre13g03752 539 MobiDBLite consensus disorder prediction 76 97 - -
Trre13g03752 539 Gene3D - 247 386 IPR029064 -
Trre13g03752 539 SUPERFAMILY Translational machinery components 113 244 - -
Trre13g03752 539 ProSiteProfiles Protein kinase domain profile. 122 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03752 539 Pfam eRF1 domain 2 113 245 IPR005141 -
Trre13g03752 539 FunFam Peptide chain release factor subunit 1 247 396 - -
Trre13g03752 539 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 113 381 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03752 Trre-Chr13 45603291 45611810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03752 113 380 Eukaryotic Initiation Factors Gene Family AT3G26618 82.528 7.67e-157 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre13g03752 Pkinase 2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03752 K03265 - gmx:100786788 456.062