Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03746 ATGGCTTCTACGCTTGTTCTCAGAAATTCTTCATCTTCTACTTCCAAACGTCTTTCTCCTTTTCTCTTCTCTTCTCAATTCCACACTTCACTCACTCGTTCGCCGCAATCTCAATCACCTCTCACCAATGATACTGCTACATCTTCTCCTTCTTCCTCCTCCTCCTCCTCCAATCCATGGTGGAGATCCATGGCTACTTTCACCAGAACAAAACCTCATGTTAACGTTGGAACTATTGGACACGTAGATCACGGGAAAACTACACTTACCGCTGCAATCACCAGAGTGCTTGCCGATGAAGGGAAAGCTAAAGCTGTTGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACAATTGCTACGGCTCATGTTGAGTATGAGACTGCAAAAAGGCATTATGCACATGTAGATTGTCCTGGACATGCCGATTATGTTAAAAATATGATTACTGGAGCTGCCCAAATGGATGGTGGCATCCTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTGGACGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCATTGTCTGCATTACAAGGTACAAATGAAGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCCAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCTGTGTTTGAATTGATTTTACCTGTTCCACTTGAACCAGGGCAAAGATTTGCCTTGAGAGAGGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCGAAAGTGATGAGCTGA 1380 0.4384 MASTLVLRNSSSSTSKRLSPFLFSSQFHTSLTRSPQSQSPLTNDTATSSPSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLEPGQRFALREGGRTVGAGVVSKVMS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03746 459 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 368 458 IPR009001 -
Trre13g03746 459 Pfam Elongation factor Tu domain 2 288 358 IPR004161 GO:0005525
Trre13g03746 459 Gene3D - 63 266 IPR027417 -
Trre13g03746 459 CDD EF_Tu 72 266 IPR041709 -
Trre13g03746 459 FunFam Elongation factor Tu 269 399 - -
Trre13g03746 459 MobiDBLite consensus disorder prediction 31 60 - -
Trre13g03746 459 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 267 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 CDD EFTU_II 274 362 IPR033720 -
Trre13g03746 459 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 PRINTS GTP-binding elongation factor signature 155 166 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 PRINTS GTP-binding elongation factor signature 192 201 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 PRINTS GTP-binding elongation factor signature 139 149 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 PRINTS GTP-binding elongation factor signature 119 127 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 CDD EFTU_III 365 454 - -
Trre13g03746 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 289 IPR027417 -
Trre13g03746 459 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 112 127 IPR031157 -
Trre13g03746 459 PANTHER ELONGATION FACTOR TU-RELATED 64 458 - -
Trre13g03746 459 Gene3D Translation factors 269 399 - -
Trre13g03746 459 Pfam Elongation factor Tu GTP binding domain 71 264 IPR000795 GO:0003924|GO:0005525
Trre13g03746 459 Hamap Elongation factor Tu [tuf]. 62 459 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre13g03746 459 Gene3D Translation factors 403 458 - -
Trre13g03746 459 Pfam Elongation factor Tu C-terminal domain 363 457 IPR004160 -
Trre13g03746 459 SUPERFAMILY Translation proteins 268 364 IPR009000 -
Trre13g03746 459 NCBIfam elongation factor Tu 63 458 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre13g03746 459 FunFam Elongation factor Tu 62 266 - -
Trre13g03746 459 NCBIfam small GTP-binding protein domain 74 210 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03746 Trre-Chr13 45568309 45572432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03746 69 457 Eukaryotic Initiation Factors Gene Family AT5G60390 30.734 9.70e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03746 K02358 - gmx:100791600 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03746 13 45568309 45572432 Trre13g03746 13 45568309 45572432 ECH