Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g03746 | ATGGCTTCTACGCTTGTTCTCAGAAATTCTTCATCTTCTACTTCCAAACGTCTTTCTCCTTTTCTCTTCTCTTCTCAATTCCACACTTCACTCACTCGTTCGCCGCAATCTCAATCACCTCTCACCAATGATACTGCTACATCTTCTCCTTCTTCCTCCTCCTCCTCCTCCAATCCATGGTGGAGATCCATGGCTACTTTCACCAGAACAAAACCTCATGTTAACGTTGGAACTATTGGACACGTAGATCACGGGAAAACTACACTTACCGCTGCAATCACCAGAGTGCTTGCCGATGAAGGGAAAGCTAAAGCTGTTGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATTACAATTGCTACGGCTCATGTTGAGTATGAGACTGCAAAAAGGCATTATGCACATGTAGATTGTCCTGGACATGCCGATTATGTTAAAAATATGATTACTGGAGCTGCCCAAATGGATGGTGGCATCCTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTGGACGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCATTGTCTGCATTACAAGGTACAAATGAAGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCCAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCTGTGTTTGAATTGATTTTACCTGTTCCACTTGAACCAGGGCAAAGATTTGCCTTGAGAGAGGGCGGCAGAACAGTTGGTGCAGGTGTGGTGTCGAAAGTGATGAGCTGA | 1380 | 0.4384 | MASTLVLRNSSSSTSKRLSPFLFSSQFHTSLTRSPQSQSPLTNDTATSSPSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLEPGQRFALREGGRTVGAGVVSKVMS | 459 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g03746 | 459 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 368 | 458 | IPR009001 | - | |
Trre13g03746 | 459 | Pfam | Elongation factor Tu domain 2 | 288 | 358 | IPR004161 | GO:0005525 | |
Trre13g03746 | 459 | Gene3D | - | 63 | 266 | IPR027417 | - | |
Trre13g03746 | 459 | CDD | EF_Tu | 72 | 266 | IPR041709 | - | |
Trre13g03746 | 459 | FunFam | Elongation factor Tu | 269 | 399 | - | - | |
Trre13g03746 | 459 | MobiDBLite | consensus disorder prediction | 31 | 60 | - | - | |
Trre13g03746 | 459 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 71 | 267 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | CDD | EFTU_II | 274 | 362 | IPR033720 | - | |
Trre13g03746 | 459 | PRINTS | GTP-binding elongation factor signature | 75 | 88 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | PRINTS | GTP-binding elongation factor signature | 155 | 166 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | PRINTS | GTP-binding elongation factor signature | 192 | 201 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | PRINTS | GTP-binding elongation factor signature | 139 | 149 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | PRINTS | GTP-binding elongation factor signature | 119 | 127 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | CDD | EFTU_III | 365 | 454 | - | - | |
Trre13g03746 | 459 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 69 | 289 | IPR027417 | - | |
Trre13g03746 | 459 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 112 | 127 | IPR031157 | - | |
Trre13g03746 | 459 | PANTHER | ELONGATION FACTOR TU-RELATED | 64 | 458 | - | - | |
Trre13g03746 | 459 | Gene3D | Translation factors | 269 | 399 | - | - | |
Trre13g03746 | 459 | Pfam | Elongation factor Tu GTP binding domain | 71 | 264 | IPR000795 | GO:0003924|GO:0005525 | |
Trre13g03746 | 459 | Hamap | Elongation factor Tu [tuf]. | 62 | 459 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Trre13g03746 | 459 | Gene3D | Translation factors | 403 | 458 | - | - | |
Trre13g03746 | 459 | Pfam | Elongation factor Tu C-terminal domain | 363 | 457 | IPR004160 | - | |
Trre13g03746 | 459 | SUPERFAMILY | Translation proteins | 268 | 364 | IPR009000 | - | |
Trre13g03746 | 459 | NCBIfam | elongation factor Tu | 63 | 458 | IPR004541 | GO:0003746|GO:0005525|GO:0006414 | |
Trre13g03746 | 459 | FunFam | Elongation factor Tu | 62 | 266 | - | - | |
Trre13g03746 | 459 | NCBIfam | small GTP-binding protein domain | 74 | 210 | IPR005225 | GO:0005525 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g03746 | Trre-Chr13 | 45568309 | 45572432 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g03746 | 69 | 457 | Eukaryotic Initiation Factors Gene Family | AT5G60390 | 30.734 | 9.70e-47 | 166 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g03746 | K02358 | - | gmx:100791600 | 800.431 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre13g03746 | 13 | 45568309 | 45572432 | Trre13g03746 | 13 | 45568309 | 45572432 | ECH |