Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03740 ATGAATGTGATAGATCCTTGGACTGGAATCGGTTGTTGTTTGAGTGCAATTGCTCTATACTATCTTAAAATAACCATTAGCAAGGATGCGGATATTCTTAAATCTGTGACTCGCGTCAAACAATTGAAGGAACTAGGTCAACTATTAGATACTCAAAATTCACCGTTACTCGTTGAAATTTCTGGAAAAGTTGCCTCTGATAGCACAATTATATGTGAATTAAGTGGTTTAGCAGGTGTAATTGTCGAAGATACGGTACATCAACATTTTCTTAAATATGACAATAGCTCTCGGAAATGGATAGAAAATTTTGCTGTAACGTCGTTCATGAGTAAAGAGGTTCCCTGGTATCTGGAAGATGCAACCGGTTGTGTGGATGTGGTTGGAGCTCAGGCGGCCACAGATTTTATGTTACCTTTTCAAAAGGAAGTATTTAAACAATCAAAACCATGGATTATACATAGAATATTGCATTATTTCCGAGGTCTCAAGGAGCTTGGTTTTAAGAGAATTGAACGAACACTTCCAATCAACACTTCCTTGACAGTTATTGGTGAGGTTTCTAAAGATGACGCTGGCACCATTCGGATTCAACAACCCGAGTCAGGACCATTTTACGTCTCTCGCAACACAATTGATGACCTTATAATTGCTAATCATGGGGATTTGGCCAGGTTGTGTAAGCATGCATCCATTGGCTTATCAATATTTGGTTCTTGTATAATAGCTTATCATACTATTCAATACATCTTGGCATGGCGACAACAATGTGAAATGCATAAAAGGGTACTTGAGGCAGCTGCTAAGGAGGCAATAGCCGCAAAACAATACATTGAAGGTAAAATGGACGACGACTTCTCAGATTTGTGTGTGATATGCATTGATCAGAAATCCACTGTTGCTTTTGTCCCGTGCGGGCATATGTGCTGCTGTAAAACTTGTTCTCGACCCTTAAAAATCTGCCCTCTTTGCCGCGGACGGATAAAGCAAGTTTTGCAAATTTTCCGTCCTTAA 1014 0.3955 MNVIDPWTGIGCCLSAIALYYLKITISKDADILKSVTRVKQLKELGQLLDTQNSPLLVEISGKVASDSTIICELSGLAGVIVEDTVHQHFLKYDNSSRKWIENFAVTSFMSKEVPWYLEDATGCVDVVGAQAATDFMLPFQKEVFKQSKPWIIHRILHYFRGLKELGFKRIERTLPINTSLTVIGEVSKDDAGTIRIQQPESGPFYVSRNTIDDLIIANHGDLARLCKHASIGLSIFGSCIIAYHTIQYILAWRQQCEMHKRVLEAAAKEAIAAKQYIEGKMDDDFSDLCVICIDQKSTVAFVPCGHMCCCKTCSRPLKICPLCRGRIKQVLQIFRP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03740 337 Pfam Zinc finger, C3HC4 type (RING finger) 288 331 - -
Trre13g03740 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 336 IPR013083 -
Trre13g03740 337 ProSiteProfiles Zinc finger RING-type profile. 290 325 IPR001841 -
Trre13g03740 337 Pfam E3 Ubiquitin ligase 92 240 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trre13g03740 337 SUPERFAMILY RING/U-box 288 331 - -
Trre13g03740 337 PANTHER - 6 304 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03740 Trre-Chr13 45302016 45305679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03740 6 271 C3H Transcription Factor Family AT1G63900 49.627 7.10e-87 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03740 K15688 - fve:101298960 350.132