Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g03729 | ATGAAGGTTGCTGTTTGCGGTACAGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAACAATGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACAAATGGTTAGGGAAAGGTACGAGAAGGTACTTGAAGCATGTTCGCTGAAGAAGGATATGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGAGTTAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCTCGTGCTCTTTACCGAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGTTCTCACCTTTTTAAGGAATGCTTGATGGGTGTTTTACGTTCAAAAACGGTGGTTTATGTTACTCATCAAGTGGAGTTTTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGACGAGCTTCTTAATATTGGAACCGATTTTATGGAACTTGTTGGGGCACACAGAGAAGCTTTGTCTACTCTTGAATCATTGGATGGAGGAAAAGCCTCTAACGAAATAAGTACATTAGAACAAGAAGTAAATATCTCTGGCACTCATGAAGAGGCAAACAAAGAAGTGCATGTAGATGATAAAGGCGAACCGAAAGGTCAAATTGTTCAAGACGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCCTATGGAGGAGCTTTCGTACCGTTCATTTTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGTGTGGGAAACTCCCATCTCAGCAGATGTGAAGCCACCTGTTGAAGGAACGACTCTTATTGAAGTCTATTTTGTTTTGGCCATTGGAAGTTCTTTATGCATTCTTATTATAGAATTGTTACTAGTTACAGTTGCTTATAAGACAGCTACTATACTCTTTAATAAAATGCACTTGTGCATCTTTCGCGCCCCCATGTCATTTTTCGATTCTACTCCAAGTGGACGAATCCTTAATAGAGCTTCTACTGATCAAAGTGCAGTGGATACAGACATTCCTTATGAAATTGGCTCATTTGCCTTTAATGTGATCATTCTTCTAGGAATTATAGCAGTGATGTCTCAGTTTGCATGGCAAGTTTTCATAGTCTTTGTACCTGTGATAGCACTCAGCATTTGGTATCAGGTATTATTTGGACCATCAAGGCTTTCTATACGATTTTTTGTTGTTGAAAATCTGACTCCATTCTATATTACATAA | 1368 | 0.3838 | MKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTMAYVAQSPWIQSGKIEDNILFGEQMVRERYEKVLEACSLKKDMEILSFGDQTVIGERGVNLSGGQKQRIQIARALYRDADIYLFDDPFSAVDAHTGSHLFKECLMGVLRSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYDELLNIGTDFMELVGAHREALSTLESLDGGKASNEISTLEQEVNISGTHEEANKEVHVDDKGEPKGQIVQDEEREKGKVGFSVYWKYITTAYGGAFVPFILLAQILFQALQIGSNYWMVWETPISADVKPPVEGTTLIEVYFVLAIGSSLCILIIELLLVTVAYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYEIGSFAFNVIILLGIIAVMSQFAWQVFIVFVPVIALSIWYQVLFGPSRLSIRFFVVENLTPFYIT | 455 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g03729 | 455 | ProSitePatterns | ABC transporters family signature. | 97 | 111 | IPR017871 | GO:0005524|GO:0016887 | |
Trre13g03729 | 455 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1 | 195 | IPR003439 | GO:0005524 | |
Trre13g03729 | 455 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 319 | 436 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre13g03729 | 455 | Gene3D | - | 1 | 208 | IPR027417 | - | |
Trre13g03729 | 455 | SMART | AAA_5 | 2 | 172 | IPR003593 | GO:0016887 | |
Trre13g03729 | 455 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 2 | 435 | - | - | |
Trre13g03729 | 455 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 194 | IPR027417 | - | |
Trre13g03729 | 455 | SUPERFAMILY | ABC transporter transmembrane region | 263 | 442 | IPR036640 | GO:0005524|GO:0016020 | |
Trre13g03729 | 455 | CDD | ABCC_MRP_domain1 | 3 | 172 | - | - | |
Trre13g03729 | 455 | Gene3D | ABC transporter type 1, transmembrane domain | 209 | 443 | IPR036640 | GO:0005524|GO:0016020 | |
Trre13g03729 | 455 | FunFam | ABC transporter C family member 5 | 1 | 204 | - | - | |
Trre13g03729 | 455 | Pfam | ABC transporter transmembrane region | 295 | 437 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre13g03729 | 455 | Pfam | ABC transporter | 2 | 124 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g03729 | Trre-Chr13 | 45216108 | 45217891 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g03729 | 3 | 217 | Calmodulin-binding Proteins | AT2G36910 | 31.250 | 4.60e-22 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g03729 | - | K05666 | gmx:100794567 | 722.235 |