Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03729 ATGAAGGTTGCTGTTTGCGGTACAGTTGGATCGGGCAAGTCTACTTTACTTTCATGTGTATTGGGAGAAGTACCAAAGATATCAGGTATCCTTAAAGTTTGTGGAACAATGGCCTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGATAATATATTGTTTGGTGAACAAATGGTTAGGGAAAGGTACGAGAAGGTACTTGAAGCATGTTCGCTGAAGAAGGATATGGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAGCGTGGAGTTAATTTGAGTGGTGGACAGAAACAAAGAATTCAAATTGCTCGTGCTCTTTACCGAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGTTCTCACCTTTTTAAGGAATGCTTGATGGGTGTTTTACGTTCAAAAACGGTGGTTTATGTTACTCATCAAGTGGAGTTTTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGACGAGCTTCTTAATATTGGAACCGATTTTATGGAACTTGTTGGGGCACACAGAGAAGCTTTGTCTACTCTTGAATCATTGGATGGAGGAAAAGCCTCTAACGAAATAAGTACATTAGAACAAGAAGTAAATATCTCTGGCACTCATGAAGAGGCAAACAAAGAAGTGCATGTAGATGATAAAGGCGAACCGAAAGGTCAAATTGTTCAAGACGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCCTATGGAGGAGCTTTCGTACCGTTCATTTTATTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGTGTGGGAAACTCCCATCTCAGCAGATGTGAAGCCACCTGTTGAAGGAACGACTCTTATTGAAGTCTATTTTGTTTTGGCCATTGGAAGTTCTTTATGCATTCTTATTATAGAATTGTTACTAGTTACAGTTGCTTATAAGACAGCTACTATACTCTTTAATAAAATGCACTTGTGCATCTTTCGCGCCCCCATGTCATTTTTCGATTCTACTCCAAGTGGACGAATCCTTAATAGAGCTTCTACTGATCAAAGTGCAGTGGATACAGACATTCCTTATGAAATTGGCTCATTTGCCTTTAATGTGATCATTCTTCTAGGAATTATAGCAGTGATGTCTCAGTTTGCATGGCAAGTTTTCATAGTCTTTGTACCTGTGATAGCACTCAGCATTTGGTATCAGGTATTATTTGGACCATCAAGGCTTTCTATACGATTTTTTGTTGTTGAAAATCTGACTCCATTCTATATTACATAA 1368 0.3838 MKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTMAYVAQSPWIQSGKIEDNILFGEQMVRERYEKVLEACSLKKDMEILSFGDQTVIGERGVNLSGGQKQRIQIARALYRDADIYLFDDPFSAVDAHTGSHLFKECLMGVLRSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYDELLNIGTDFMELVGAHREALSTLESLDGGKASNEISTLEQEVNISGTHEEANKEVHVDDKGEPKGQIVQDEEREKGKVGFSVYWKYITTAYGGAFVPFILLAQILFQALQIGSNYWMVWETPISADVKPPVEGTTLIEVYFVLAIGSSLCILIIELLLVTVAYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYEIGSFAFNVIILLGIIAVMSQFAWQVFIVFVPVIALSIWYQVLFGPSRLSIRFFVVENLTPFYIT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03729 455 ProSitePatterns ABC transporters family signature. 97 111 IPR017871 GO:0005524|GO:0016887
Trre13g03729 455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 195 IPR003439 GO:0005524
Trre13g03729 455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 436 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03729 455 Gene3D - 1 208 IPR027417 -
Trre13g03729 455 SMART AAA_5 2 172 IPR003593 GO:0016887
Trre13g03729 455 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 435 - -
Trre13g03729 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 194 IPR027417 -
Trre13g03729 455 SUPERFAMILY ABC transporter transmembrane region 263 442 IPR036640 GO:0005524|GO:0016020
Trre13g03729 455 CDD ABCC_MRP_domain1 3 172 - -
Trre13g03729 455 Gene3D ABC transporter type 1, transmembrane domain 209 443 IPR036640 GO:0005524|GO:0016020
Trre13g03729 455 FunFam ABC transporter C family member 5 1 204 - -
Trre13g03729 455 Pfam ABC transporter transmembrane region 295 437 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g03729 455 Pfam ABC transporter 2 124 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03729 Trre-Chr13 45216108 45217891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03729 3 217 Calmodulin-binding Proteins AT2G36910 31.250 4.60e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03729 - K05666 gmx:100794567 722.235