Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03722 ATGTCATTTCTCTCCAATCTCCTTCCTCTCCTTTTCCTTCTCCTCATTTTCCCCTCCTTTTCCATCTCCGCCACAACATGTCCTCTCAACATAACCATCCTCCGCCACATCGGCGACGGCACACTCCCTCCCATCAACCCCGCAGAACGGTGCCATTACATCACAGAAGCTATCAATCTAGTCCAGTCCGATTATCTCCACCGCACCGGCTTCTTCGTTCCACCTCTCGACACCGCCGAATCATGCTGGACTTCATTCCAATCATTCATCGATGAATTTCAACCTAATTTCGATATTCGTCGTTCTTGCAATTTTCAAACTTCTTGGATCTCACAAGGTTGCATGAACATCACAACAAAACAACAATTCGAAAATCAAGTTTCGTTACCTCAACTTCAATCTCTTCAATTAAACTGTAACGTTTCGCTTGATAACAACATTCCTTGTGGTATTTGTACATCCAAACGCGCAGAAGCACTTTCATCTCTCACCGGAGCAACTCCCGGTACCGTCGCCGATTGTAGATCTTACACCGCAATTTACTCCGCTTCACTTTCCGATGAGTTTGGTCCAACTAACACCGGTACTGCTAAGTGTTTGTTCGGTCTCGATTTCACTTCGTCTTCTTCAGGTTCTAGCAATAAGCATAAAACTACTGTTATTGTTCTTGTAACAGTTTTTGTATTTTTAGGATTGTTATTGTTTTGTGGAATTTGGATTTTCCTTAAGCGGAGAAAAATTGCGAAAGAGAAAGTTAAAAATGGTAGAACTGAGATTGTTATAGGTTTGAATTCGGGTTTGGATTCGATGAATCAAAGTACTACTTTGATTAGGTTTAGTTTTGATGAGATTAAGAAAGCAACTAGGAATTTTTCTAGAGATAATATAATTGGAAGTGGTGGTTATGGAAATGTTTATAAAGGTTTATTATCTGATGGAACAGAAGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGTGATGCAAGTTTTACTCATGAAGTTGAAGTTATTGCTAGTGTTAGACATGTTAATCTTGTTGCTTTACGAGGTTATTGTACTGCTACTACTAATTTAGAAGGTCATCAGAGGATTATTGTTACTGATTTAATGGAGAATGGGAGTCTTTATGATCATTTATTTGGTTCGTCGAAGAAGAAATTGAGTTGGCCGATTCGTCAGAAGATTGCTCTTGGTACGGCTAGGGGTTTAGCTTATTTGCATTATGGTGCTCAGCCGTCGATCATTCATAGGGATATTAAAGCGAGTAATATACTTTTGGATGAGAAGTTTGAGGCTAAGGTGGCGGACTTTGGATTGGCGAAGTTTAATCCAGAGGGAATGACTCATATGAGTACTAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGGAGTGATGTGTTTAGTTTCGGTGTTTTGCTTCTCGAGCTTTTGAGCGGAAGAAAGGCGCTTGAAACAAATGAGGATGGTCAACCCTCTGCTTTTAGTGACTTGGCTTGGTCATTGGTTAGAAATAATAGGGCTTTGGATGTTGTTGAAGATGGTATGCCAGAAGCTGGTACACCGGAAATTCTCGAGAAATACGTGTTGGTTGCTGTTTTATGTTCTCATCCGCAGCTATATGCGAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAAACAGATGATGAAGCAATGCCTTCGGTAGTCGAAAGGCCAATCCCTTTTATTGCGGGGAGACTTGATATTGAGAAATCTGCAAGCAATAACTCGGGGCAGCTCTGCAGTCCTACTGGTTATCAAGCATATACAATGCAATTACAAAGTCATCGCGCTTCTACTTGTAACGAAGAGGAAGGAAACTCGAAACGTCCCTCTAATTGTAAGGAAGAGGAAGGAGAAGAAGGAAGCTCAAAACGTCCTTCTGATTGTAAGGAAGAGGAAGGAAACTCGAGACGCGGGTCTGTAAGCAAAGATTGA 1998 0.4129 MSFLSNLLPLLFLLLIFPSFSISATTCPLNITILRHIGDGTLPPINPAERCHYITEAINLVQSDYLHRTGFFVPPLDTAESCWTSFQSFIDEFQPNFDIRRSCNFQTSWISQGCMNITTKQQFENQVSLPQLQSLQLNCNVSLDNNIPCGICTSKRAEALSSLTGATPGTVADCRSYTAIYSASLSDEFGPTNTGTAKCLFGLDFTSSSSGSSNKHKTTVIVLVTVFVFLGLLLFCGIWIFLKRRKIAKEKVKNGRTEIVIGLNSGLDSMNQSTTLIRFSFDEIKKATRNFSRDNIIGSGGYGNVYKGLLSDGTEVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGRKALETNEDGQPSAFSDLAWSLVRNNRALDVVEDGMPEAGTPEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDEAMPSVVERPIPFIAGRLDIEKSASNNSGQLCSPTGYQAYTMQLQSHRASTCNEEEGNSKRPSNCKEEEGEEGSSKRPSDCKEEEGNSRRGSVSKD 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03722 665 Pfam Protein tyrosine and serine/threonine kinase 294 565 IPR001245 GO:0004672|GO:0006468
Trre13g03722 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Trre13g03722 665 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 372 573 - -
Trre13g03722 665 MobiDBLite consensus disorder prediction 617 665 - -
Trre13g03722 665 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03722 665 Pfam SPARK 23 166 IPR043891 -
Trre13g03722 665 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 98 617 - -
Trre13g03722 665 MobiDBLite consensus disorder prediction 622 665 - -
Trre13g03722 665 ProSiteProfiles Protein kinase domain profile. 291 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03722 665 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Trre13g03722 665 SUPERFAMILY Protein kinase-like (PK-like) 267 566 IPR011009 -
Trre13g03722 665 Gene3D Phosphorylase Kinase; domain 1 261 370 - -
Trre13g03722 665 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 252 370 - -
Trre13g03722 665 CDD STKc_IRAK 297 566 - -
Trre13g03722 665 Gene3D Transferase(Phosphotransferase) domain 1 372 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03722 Trre-Chr13 45076752 45078749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03722 1 611 Receptor kinase-like Gene Family AT2G48010 59.578 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre13g03722 PK_Tyr_Ser-Thr 8.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03722 - - gmx:100786298 880.167