Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03685 ATGTTGTGTTGCGGAGGCGCGGAAGAAGATACCAGCGGGCCACCTGCAAACCAATACACTGCACCATCAAGAGGGGGTAACTCATATGGCGGTGGCGGAGGAAATGATAGAGGAGAACCAAGGAGCAATATTGCCAAAACTGGTGGTCCACAAAAAGTATTACCAATTGAGATACCCTCTATATCATTGGATGAGTTAAATAGGTTAACAGGTAACTTTGGTACAAAGGCTTTCATTGGTGAAGGTTCCTATGGAAGGGTTTACTATGCAAAATTAAGTAATGGTACTGAAGCTGCAATTAAAAAACTTGATACCAGTTCTGGTTCTGAACCTGAAAACGACGATTTCGCCGCCCAGTTATCAGTTGTTTCAAGACTCAAGCATGACAATTTTGTGGAGTTGACTGGATATTGTCTAGAAGCAGACAACAAAATTTTGGTTTATCAATATGCAAGTTTGGGTTCTTTGCATGATGTGTTACATGGAAGAAAAGGTGTACAAGGTGCTGAACCTGGTCCAGTTTTAAGCTGGAATCAGAGAGCGAAAATTGCATTTGGTGCAGCAAAAGGGCTAGAGTTTCTTCATGAAAAGGTTCAACCTTCTATTGTTCATCGCGATGTTCGATCCAGTAATGTCTTGCTGTTTAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACCGCAGCTCGTCTACATTCGACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAATATGCTATGACCGGACAGATAAATCAAAAAAGTGATGTTTATAGTTTTGGAGTTGTGCTTTTAGAACTCTTGACCGGAAGAAAGCCGGTAGACCACACAATGCCTAAAGGGCAACAAAGTCTTGTGACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGAATACCCCCCAAAGGCAATTGCTAAGGTTTGCTAG 987 0.4215 MLCCGGAEEDTSGPPANQYTAPSRGGNSYGGGGGNDRGEPRSNIAKTGGPQKVLPIEIPSISLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSNGTEAAIKKLDTSSGSEPENDDFAAQLSVVSRLKHDNFVELTGYCLEADNKILVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQINQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKVC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03685 328 FunFam pto-interacting protein 1 152 328 - -
Trre13g03685 328 Gene3D Transferase(Phosphotransferase) domain 1 152 328 - -
Trre13g03685 328 SMART tyrkin_6 73 319 IPR020635 GO:0004713|GO:0006468
Trre13g03685 328 FunFam probable protein kinase At2g41970 46 150 - -
Trre13g03685 328 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Trre13g03685 328 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 327 - -
Trre13g03685 328 ProSitePatterns Tyrosine protein kinases specific active-site signature. 202 214 IPR008266 GO:0004672|GO:0006468
Trre13g03685 328 SUPERFAMILY Protein kinase-like (PK-like) 53 325 IPR011009 -
Trre13g03685 328 Gene3D Phosphorylase Kinase; domain 1 42 150 - -
Trre13g03685 328 Pfam Protein tyrosine and serine/threonine kinase 77 289 IPR001245 GO:0004672|GO:0006468
Trre13g03685 328 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03685 328 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03685 Trre-Chr13 44487655 44489794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03685 61 328 Receptor kinase-like Gene Family AT4G02010 47.232 6.26e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trre13g03685 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03685 - - gmx:100812507 595.119