Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03673 ATGGAGCTAGCTTTGAGCTTAGGAGACACACCAAAACCATTTTCTTTGTTTGAAAACCCCAACAAAAGTTTTTCCATAGTACTTGAACAAGCTCAAAAATCCTTAGAGGAAAAAAGAGGTTCATCAGATCCACCTATTCAGCTCAACCTTCTTCCTTCAACACCGGTTCCTCGTTCTACTCCTTCTCATCAAATTCCTTGGCTCAACGATGCACTGGGTGTGGAACCGGCGAGGGTACCAAATGCAAACCGATTCCGGTTGGCGTCCGTGGAAGATACTACGGACGAGGGAGCTGCGGTTTCATCCCCGAATAGCGCAGCGTCATCTTTTCGGATGGATTTCTCTATCATGAATGGTAATGGTGATGCAAGAAATAGTAGCCGTGAGGGGGGTGTCGATAGCGATGATGAAGAAAATGGATCCACTAGGAAGAAACTCAGATTATCTAAAGATCAATCAGCTTTTCTTGAAGAAACTTTCAAAGAACACACCACTCTCAATCCTAAACAAAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAATTAAAGCAAACAGAAGTGGATTGTGAGTACTTAAAAAAATGTTGTGAGACACTAACAGAAGAAAATAGAAGGTTACAAAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACTACACTCACTATGTGTCCCTCTTGTGAGAGGGTTGCCACCAACACCACCGCAGCAGCCGCCACCAAACAAACCGCCTCGATCGCCGCCGGCGGGCGCCACCAAAAATAA 843 0.4365 MELALSLGDTPKPFSLFENPNKSFSIVLEQAQKSLEEKRGSSDPPIQLNLLPSTPVPRSTPSHQIPWLNDALGVEPARVPNANRFRLASVEDTTDEGAAVSSPNSAASSFRMDFSIMNGNGDARNSSREGGVDSDDEENGSTRKKLRLSKDQSAFLEETFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTAAAATKQTASIAAGGRHQK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03673 280 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Trre13g03673 280 SUPERFAMILY Homeodomain-like 130 200 IPR009057 -
Trre13g03673 280 MobiDBLite consensus disorder prediction 128 148 - -
Trre13g03673 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 270 - -
Trre13g03673 280 FunFam Homeobox-leucine zipper protein 18 129 204 - -
Trre13g03673 280 MobiDBLite consensus disorder prediction 117 148 - -
Trre13g03673 280 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Trre13g03673 280 Gene3D - 147 197 - -
Trre13g03673 280 SMART HOX_1 141 203 IPR001356 GO:0003677
Trre13g03673 280 Coils Coil 205 235 - -
Trre13g03673 280 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Trre13g03673 280 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Trre13g03673 280 CDD homeodomain 143 200 IPR001356 GO:0003677
Trre13g03673 280 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03673 Trre-Chr13 44311232 44313100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03673 133 276 Homeobox Transcription Factor Family AT4G37790 72.917 6.66e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre13g03673 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03673 K09338 - jre:109011942 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03673 13 44311232 44313100 Trre13g03673 13 44311232 44313100 ECH
Trre13g03673 13 44311232 44313100 Trre1g02181 1 17385825 17387974 PCT