Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03671 ATGGGGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCTGACCCGGAACCACAAACTGGGTCTTTAGCTAATGAAGCTTTGAATTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGCGAAGCTGCTGCGAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAGCTTCCAACATATCAACCAGTTCACCGCGTTCTACCTCAACCCGATTATCGTCAAGTTCATCAAATTCTACCGGAACCTTCACGCCATATTTATATCCCACCCGAAGCTCGCAATATCTCTATCGAATTGAACAATTTTTTGGTCAATTCGGGTAATGGAACTGGATTACAGGCTGGGGAAGGAAGTGTAGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGTGCCTGCACCGAAAGCGTGTGAGAACAACAATGGTGTTACGGAAGATGAGACATCGCAGAAGAAGGATGATGTTGAAAAGGCTAGTGGCAATGATGGAGACTTTTTTGATTGCAATATCTGTTTGGACCTTGCCAAGGAACCTGTTTTGACTTGCTGTGGTCATCTGTTTTGTTGGCAATGCTTATATCGATGGCTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACAATTAAGAATGTTACCCCTATATATGGCCGTGGGAACAATGCCCGAGTTCTTGAGGAGGATTCGGCTCTTAAAATCCCTCCTAGGCCACAAGCAAAGCGTGTTGAGAGTCTGAGACAAACCATTCATAGAAATGCATTTGGACTCCCTGTGGAAGAGATGATGCGGCGTCTTGGAAGCAGAATTGATTTCACTAGGGATTTAGTTCAGCCAAATGAACCAGAAAATGCTCGTGGAACAGCAGATAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGTAGAGAGCAGAATCCTGTACCACCCGCAGATGATGTTGCTGACTTGAATCAGAACAATGTTAATGGTTCTGAGTTGGGAGGGGATAACCGCAGGGTGCAATCCCTTTTACTTAGAAGATCACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTTACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTTCTTCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTAATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAACCGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGGCGTTTGAACTAA 1362 0.4537 MGEENSDAMNLDLNLGPDPEPQTGSLANEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPTYQPVHRVLPQPDYRQVHQILPEPSRHIYIPPEARNISIELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEVPAPKACENNNGVTEDETSQKKDDVEKASGNDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKNVTPIYGRGNNARVLEEDSALKIPPRPQAKRVESLRQTIHRNAFGLPVEEMMRRLGSRIDFTRDLVQPNEPENARGTADRTTSLLSRFLTSRGMRREQNPVPPADDVADLNQNNVNGSELGGDNRRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPSSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDSGDSRAPRRRRLN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03671 453 MobiDBLite consensus disorder prediction 133 161 - -
Trre13g03671 453 SUPERFAMILY RING/U-box 167 225 - -
Trre13g03671 453 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 136 328 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre13g03671 453 MobiDBLite consensus disorder prediction 314 341 - -
Trre13g03671 453 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Trre13g03671 453 CDD RING-HC_RNF5-like 170 213 - -
Trre13g03671 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 239 IPR013083 -
Trre13g03671 453 SMART ring_2 172 212 IPR001841 -
Trre13g03671 453 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Trre13g03671 453 MobiDBLite consensus disorder prediction 422 453 - -
Trre13g03671 453 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g03671 453 Pfam Zinc finger, C3HC4 type (RING finger) 172 212 - -
Trre13g03671 453 MobiDBLite consensus disorder prediction 425 453 - -
Trre13g03671 453 FunFam E3 ubiquitin-protein ligase RMA3 140 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03671 Trre-Chr13 44256081 44257442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03671 1 444 C3H Transcription Factor Family AT3G58030 53.548 3.88e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03671 K10666 - gmx:100811099 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03671 13 44256081 44257442 Trre13g03671 13 44256081 44257442 ECH