Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03656 ATGGTATTTTGCTTTCAGGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAGGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATATAGAGGAATGTGTACTTGTACATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTTTTAGGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCATCTGTTCCTGCAAGAGTTGCACCGAATGCTAATGCACCGAATGCTAATGCACTGAATGCTAATGCACCTCCTTATCCAACAGAAGCCTTATCTATGCCTCCAGAATATGTTGCACCGAATGCTGCGCCTCCTTATCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAGCAGGTGCACGATATTCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 729 0.428 MVFCFQGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRQVTGERLLNYFEGHGDIEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTFRGRTITVKYDLHNVEGGQPSVPARVAPNANAPNANALNANAPPYPTEALSMPPEYVAPNAAPPYPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQAGARYSASPYPYLRTTALYAASPYPTLLTAPSTQYYYYPQYYNHPNP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03656 242 Gene3D - 10 128 IPR012677 -
Trre13g03656 242 PANTHER GEO13361P1-RELATED 23 206 - -
Trre13g03656 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 104 IPR000504 GO:0003723
Trre13g03656 242 SUPERFAMILY RNA-binding domain, RBD 23 114 IPR035979 GO:0003676
Trre13g03656 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 110 IPR000504 GO:0003723
Trre13g03656 242 SMART rrm1_1 31 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03656 Trre-Chr13 44147331 44148221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03656 22 91 C2H2 Transcription Factor Family AT2G19380 37.143 1.40e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03656 K12741 - gmx:100802911 115.931