Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03655 ATGGCTGCGGTTCAGGCGAATATGGATATAGAAGATCATAGCCAGGTTGAAGTTGGCACTGATGCACTCTTTGTTGGAGTTTATGATGGCCACAAAGGCGACACCGCTGCTATCTATCTTAGAGATCATATCTTCGGGGAAATATTGAGGCGTATTCAGCAGAATAATAACTTAATGACTGAGCTTATTCTGAGGCAAGCTGTTCACCAAATGGAGAGAGATACCAAGTCAAGAGATGACCAGTTTTCATCTGAACAAGTGTTTCTTCTGCAAATACTATCGGAAATTTTGAATGAGCGAATCGGAGATGTTACTATTTCAAAGGATGTTGCTTTGTTTATTTATGGAAAATTCAAGAAATCTATCGGGGTTCTTGAGCAAGCAGTTAGAGGCAAGTCTGGTCTTCCCAGTGGCATTACTGCAGTCGATGTTCTTGGCTACTCTCTTACTATGTTGAGGGACATCTGTGCTCATGACAGTATGCGAGGTGACGAAGAGGATGCAAATGATGTTGTCGACGTGTTATTGTCATATGGCCTAATTGAGTTGCTTTTGATTCTGCTTGGGGACCTTGAACCTCCGGCAATAATCAGGAAAGGAATCAAACAATCTGATAATCAAGACGGTACTAGTTGTTCCTTGAAACCATGCCCTTACAAGGGCTTTAGGAGAGACATAGTTGCACTTATTGGCAATTGTGTGTATAGAAGAAAGCATGTACAAGATGAAATTAGGAGTAGGAATGGAATTCTACTGCTATTGCAGCAGTGTGTTACCGATGACGACAATCCTTACCTGAGAGAATGGGGCTTATGGTGTGTTAGGAATGTATTGGAGGGCAATGAGGAAAATCAAAAGGTAGTTTCTGAGTTGGAGCTGCAGGGATCTGCTGATGTGCCCCAAATTTCTGCACTTGGTCTTCGAGTCGACGTTGATCCAAAAACTAGGCGTCCAAAGCTTGTCAATGTCCCATGA 975 0.4256 MAAVQANMDIEDHSQVEVGTDALFVGVYDGHKGDTAAIYLRDHIFGEILRRIQQNNNLMTELILRQAVHQMERDTKSRDDQFSSEQVFLLQILSEILNERIGDVTISKDVALFIYGKFKKSIGVLEQAVRGKSGLPSGITAVDVLGYSLTMLRDICAHDSMRGDEEDANDVVDVLLSYGLIELLLILLGDLEPPAIIRKGIKQSDNQDGTSCSLKPCPYKGFRRDIVALIGNCVYRRKHVQDEIRSRNGILLLLQQCVTDDDNPYLREWGLWCVRNVLEGNEENQKVVSELELQGSADVPQISALGLRVDVDPKTRRPKLVNVP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03655 324 PANTHER ATAXIN-10 64 323 - -
Trre13g03655 324 SUPERFAMILY PP2C-like 9 71 IPR036457 -
Trre13g03655 324 Gene3D - 125 301 IPR011989 -
Trre13g03655 324 Gene3D - 1 115 IPR036457 -
Trre13g03655 324 Pfam Spinocerebellar ataxia type 10 protein domain 222 315 IPR019156 -
Trre13g03655 324 SUPERFAMILY ARM repeat 142 291 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03655 Trre-Chr13 44129316 44134095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03655 1 72 PP2C-type Phosphatase Gene Family AT5G06750 48.611 1.96e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03655 K19323 - gmx:100795092 384.03