Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03642 ATGAGAGAAGTTTGGAATATAGGAACATGCAATCAACAGCTATCAATACTTGAAGAAGGAGAAGTTGATTCAACAAAATCTTCAAATACAAACACAATTATGAGCCGTTTTGAGTCACCAGCTTCTGCTTTTTATGCAACAGAAAATTGCATGGGATTTGCAGAATTTGATAACCAAGTTAGTAATAATAATAATATTAATCCATCTTTGAGTTCTCAATTATATAAGCTTAATGATTTGGAGTTCCCTTTGTATCAATCTTTAAGGGAAAATAATCATTTCTTGGAATCATCAAACCAACTTGACCCCAACTTTGAATTTTCAAACACTTTGCAAGCATTGGTGAAATCTCAATTGAATGGTAATCAATGTCTTAGATCGCCAGAAAACTCGAATAAATTTTCGTATGAGAATTTTCCCGGGATTAAGTCTTTCCCAATTGAACAACAAAAGTTGTTTTTTGATGGTCTTGCCTCAGTTAACAACAGCTCATCATTTTGTAACAAAGACTATATGGTTGGTCGAGGATCTTATCATTTATCTGTTGAACAATTGAATTTCTCTTCTCGTCATGAGAAGTTGTGTCCAACAATTTCCGCTGGAAGTTCATCGACTTCTCTTGGAAACACTACTTCTAATGGGAATGTAGTCTCGAGTAAAACACGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTGTGTGTGTGAATCGCCTCGGAGGTGCCGAGAAGGCAACACCAAAAGCTATATTAAAGATGATGGATTCTGATGTTTTGACCATATTCCATGTGAAAAGTCATTTGCAAAAATATAGAACTGCAAAATTCATGCCAGAGTCAGTTCAAGGTAAATCTGACAAAAGAATCCATACAGCGGATCTGCATCATGTTGGTGTTAAATGTGGATTTCAAATCAAGGAAGCACTTCAACTTCAATTAGATGCACAAAGGCGTCTTCATGAACAACTCGAGATTCAAAGAACATTACAATTGAGACTTGAGGAACAAGGCAGACAGCTGAAAGAAATGTTTGATAAGCAGCAGAAGACATGTAATAATCTCTTCAATACTCCAAATACAATCAATGATGGTGGTACAAAAATTAGTCACAAAGATGCTGAGGTTTCTATTTCTGAAGGGGCTGAGAATTCATAA 1158 0.3549 MREVWNIGTCNQQLSILEEGEVDSTKSSNTNTIMSRFESPASAFYATENCMGFAEFDNQVSNNNNINPSLSSQLYKLNDLEFPLYQSLRENNHFLESSNQLDPNFEFSNTLQALVKSQLNGNQCLRSPENSNKFSYENFPGIKSFPIEQQKLFFDGLASVNNSSSFCNKDYMVGRGSYHLSVEQLNFSSRHEKLCPTISAGSSSTSLGNTTSNGNVVSSKTRIRWTKDLHEKFVVCVNRLGGAEKATPKAILKMMDSDVLTIFHVKSHLQKYRTAKFMPESVQGKSDKRIHTADLHHVGVKCGFQIKEALQLQLDAQRRLHEQLEIQRTLQLRLEEQGRQLKEMFDKQQKTCNNLFNTPNTINDGGTKISHKDAEVSISEGAENS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03642 385 FunFam Two-component response regulator 217 277 - -
Trre13g03642 385 Pfam MYB-CC type transfactor, LHEQLE motif 305 351 IPR025756 -
Trre13g03642 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 212 365 IPR044848 GO:0003700
Trre13g03642 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 220 275 IPR006447 GO:0003677
Trre13g03642 385 SUPERFAMILY Homeodomain-like 218 274 IPR009057 -
Trre13g03642 385 Coils Coil 307 327 - -
Trre13g03642 385 MobiDBLite consensus disorder prediction 363 385 - -
Trre13g03642 385 Gene3D - 219 278 - -
Trre13g03642 385 Pfam Myb-like DNA-binding domain 224 273 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03642 Trre-Chr13 44008500 44013268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03642 207 348 G2-like Transcription Factor Family AT4G28610 55.172 7.22e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre13g03642 Myb_DNA-binding 2.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03642 - - cam:101504038 540.421