Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03631 ATGGATATTCGCAAAAGAGGAAGACCCGAACATGGATTCAACACCAATGGTGGATTCAAGAAATCAAGACAAGAAATGCAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCCTTTGGCGAGAGCTGCCATTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGCTGCCCAGATGATGAATCTAACAGCTGCAGCACCTCCTGCACCCAGAAATGTTGCACCCCCACCACATGTACCTAATGGGTCCGCGCAATCTTCTGTTAAAAGCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGGAAGCCTGTTGCTCTGTCATTTGACGACCACCGTGCCATGGGACCACCCAATGTAGGTCGTTTTGGTGGCCATCGGATGGAGCCCCCTCCTGGTCCAACTACCAGCTTCGGTGCCAACGCCACTGCCAAGATCAGTGTAGAAGCTTCTCTAGCTGGAGCAATCATTGGCAAGGGTGGTGTGAATTCAAAACAGATCTGTCGCCAAACTGGAGCCAAACTGGCAATTCGAGAGCATGAAGCTGACCCAAATCTTAGGAACATTGAACTTGAGGGGACTTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGCTGACCCTGCAAATGTCTGCACCACCTAAAACATCCCAAGGAGGAGGAGGAGGAGGAGGCCCTGGTGGCGCCCCTGGTCATCATGGAAGCAACTTTAAAACAAAACTGTGTGAGAATTTTGCAAAGGGATCTTGCACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGATTTGCGTAAATGA 900 0.4767 MDIRKRGRPEHGFNTNGGFKKSRQEMQSLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVPGGYNAAAQMMNLTAAAPPAPRNVAPPPHVPNGSAQSSVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRAMGPPNVGRFGGHRMEPPPGPTTSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHEADPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTSQGGGGGGGPGGAPGHHGSNFKTKLCENFAKGSCTFGERCHFAHGAADLRK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03631 299 Gene3D K Homology domain, type 1 165 266 IPR036612 GO:0003723
Trre13g03631 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 241 IPR036612 GO:0003723
Trre13g03631 299 CDD KH-I_AtC3H36_like 172 237 - -
Trre13g03631 299 MobiDBLite consensus disorder prediction 17 36 - -
Trre13g03631 299 Gene3D - 94 131 - -
Trre13g03631 299 Gene3D - 267 299 - -
Trre13g03631 299 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Trre13g03631 299 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Trre13g03631 299 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Trre13g03631 299 SUPERFAMILY CCCH zinc finger 268 298 IPR036855 GO:0046872
Trre13g03631 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Trre13g03631 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Trre13g03631 299 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 146 IPR045877 GO:0003729
Trre13g03631 299 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Trre13g03631 299 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g03631 299 SUPERFAMILY CCCH zinc finger 99 130 IPR036855 GO:0046872
Trre13g03631 299 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Trre13g03631 299 Pfam KH domain 172 234 IPR004088 GO:0003723
Trre13g03631 299 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Trre13g03631 299 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Trre13g03631 299 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Trre13g03631 299 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Trre13g03631 299 MobiDBLite consensus disorder prediction 243 264 - -
Trre13g03631 299 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Trre13g03631 299 SMART kh_6 168 238 IPR004087 GO:0003676
Trre13g03631 299 FunFam Zinc finger CCCH domain-containing protein 263 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03631 Trre-Chr13 43897766 43901005 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre13g03631 KH_1 2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03631 - - gmx:100803981 500.36