Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03623 ATGGGAAGAATCGAGAGATTTCAATCCTCTTACCAATCCTTGGATGAATCGTTTGAAATTGGGAAAGAGATGTATCGTGGACAACAATACAGTCAAATTTACTTCGCTCGTCTTCATTTGATGCGAACTCTTTTGTATTCTCTTGTTCCTCATTGGAAACCTAATTCTCCTGTTTGCACTGTATTGGGATTGGAAGAGGGAAAGGACTGTGTCATTGTTGGAACATTGTTTAAACACATGAAATTGAAACCTTGCATACTTGATGAGTATTCTAAAGAGAGGTCGGTGGTTCCGCTTGTCAAGCCGCATAACTTTGTGGACCAAGATGATTATCTTGATTTGGAAGATGAAAGTGGAAGAGTTAAGCTTAGTGGGAATATTATTCTACCATCTGTTTATGTAACAGGAATTGTGGTTGCTATATATGGTAAGGAAACGGGAGCTGGTGATTTTTTGGTTCATGAAGTTCTAGAAGCTGGCTTACCACAGCAGATAGAATTCCCTATTAAATCAAGGGAAGACAGATATGTTGTTCTTGTGTCAGGATTAAGTGTTGGGAGCAGCAGGTCTAACCCTCTGCAGTTTCAGCTTCTAGTTGATCATATTACTGGTCATTTAGGAGATGAGGAGGAGCAAAGTCTTGCATCACAAATTGTTCGTGTAGTCATTGCTGGAAATTCTGTTGAGATACCTCGTAGACTTCTTAATGGACAGAATTTGGCTTCAAAAGATCTCTCGAGGATGGCAGAACCAGTAAAGGAGCTAGATATTCTGTTGAATCAGATTGCTGCTGCTTTGCCATTGGATATCATGCCAGGACCCTGTGACCCTGCTAATTTCTCATTACCACAGCAGGCGTTGCATAGATGCCTTTTCCCTGAGTCATCAGTGTACAACACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATGGTATCAGGTTTCTTGGGACATCTGGTCAGAATGTAGATGATCTTGACAAGTATTCAGAGGCAAAAGATAGGCTTGACTTCATGGAAAGGACATTACGATGGAGGCATTTGGCACCAACTGCACCTAATACCCTTGGGTGCTATCCTTATACTGATAGGGATCCTTTCTTCATTGAGAGTTGTCCCCATGTGTACTTTGTTGGAAATCAGGAAAAATATGATACTCGTGTGATAAAGGGATCAGAAGGGAAATCGGTGAGACTCGTATGTGTTCCTAAATTCAGCGAAACTGGAGTTGCAGTTATGTTGAATCTGAGGGATCTCGAATGTCATGCTCTCAGTTTTGGAACTCAATTCAGCCCATAA 1305 0.4092 MGRIERFQSSYQSLDESFEIGKEMYRGQQYSQIYFARLHLMRTLLYSLVPHWKPNSPVCTVLGLEEGKDCVIVGTLFKHMKLKPCILDEYSKERSVVPLVKPHNFVDQDDYLDLEDESGRVKLSGNIILPSVYVTGIVVAIYGKETGAGDFLVHEVLEAGLPQQIEFPIKSREDRYVVLVSGLSVGSSRSNPLQFQLLVDHITGHLGDEEEQSLASQIVRVVIAGNSVEIPRRLLNGQNLASKDLSRMAEPVKELDILLNQIAAALPLDIMPGPCDPANFSLPQQALHRCLFPESSVYNTFRSCTNPHCFELDGIRFLGTSGQNVDDLDKYSEAKDRLDFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIESCPHVYFVGNQEKYDTRVIKGSEGKSVRLVCVPKFSETGVAVMLNLRDLECHALSFGTQFSP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03623 434 CDD MPP_PolD2_C 176 428 IPR041863 -
Trre13g03623 434 FunFam DNA polymerase delta subunit 2 35 159 - -
Trre13g03623 434 Pfam DNA polymerase delta subunit OB-fold domain 29 156 IPR040663 -
Trre13g03623 434 Pfam DNA polymerase alpha/epsilon subunit B 177 387 IPR007185 GO:0003677|GO:0006260
Trre13g03623 434 Gene3D - 166 433 - -
Trre13g03623 434 Gene3D - 36 159 - -
Trre13g03623 434 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 3 428 IPR024826 -
Trre13g03623 434 FunFam DNA polymerase delta small subunit 161 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03623 Trre-Chr13 43758184 43762810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03623 5 433 Core DNA Replication Machinery Family AT2G42120 76.457 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03623 K02328 - gmx:100780072 774.237