Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03618 ATGGTTTGGAGGGTCAGAGGACCAGACATCGAACTGAGAAACCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCTATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAAATATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAAATGCTAA 396 0.4066 MVWRVRGPDIELRNLYIGNLSRQVTRERLLNYFEGHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRNITVKYDLHNVEGGQPSVPARVALNANAPPYPMEALSMTPEYVAPKC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03618 131 Gene3D - 7 106 IPR012677 -
Trre13g03618 131 PANTHER OS02G0815200 PROTEIN 12 93 - -
Trre13g03618 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 86 IPR000504 GO:0003723
Trre13g03618 131 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Trre13g03618 131 SMART rrm1_1 14 89 IPR000504 GO:0003723
Trre13g03618 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03618 Trre-Chr13 43740192 43740951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03618 9 74 C2H2 Transcription Factor Family AT2G19380 36.364 3.89e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03618 K12741 - gmx:100776344 108.997