Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03617 ATGATCAAAGCTTTGTCAGATGACAGTTTTGATGTCGTTTATCTTAAGAACAAGGTTTGCTATGTCCTGTTTACCCTTTTGGCTTATACGGTATTCTTTCCTCTATTACATACGATACAGTTTGCAGCTAACAAGAGACAAAAAAAGGTATTCCATGCAAGAGTCTTAAAAAACACTGATAGATTCATTATATTTGGATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAACCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCTATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAAATATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAAATGCTAA 612 0.3824 MIKALSDDSFDVVYLKNKVCYVLFTLLAYTVFFPLLHTIQFAANKRQKKVFHARVLKNTDRFIIFGSDDEGLTKTTSSATDLSQRNLYIGNLSRQVTRERLLNYFEGHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRNITVKYDLHNVEGGQPSVPARVALNANAPPYPMEALSMTPEYVAPKC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03617 203 Gene3D - 67 177 IPR012677 -
Trre13g03617 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 165 IPR000504 GO:0003723
Trre13g03617 203 SMART rrm1_1 86 161 IPR000504 GO:0003723
Trre13g03617 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 158 IPR000504 GO:0003723
Trre13g03617 203 SUPERFAMILY RNA-binding domain, RBD 78 169 IPR035979 GO:0003676
Trre13g03617 203 PANTHER OS02G0815200 PROTEIN 78 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03617 Trre-Chr13 43740192 43742970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03617 77 146 C2H2 Transcription Factor Family AT2G19380 35.714 1.77e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03617 K12741 - gmx:100776344 112.464