Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre13g03616 | ATGATCAAAGCTTTGTCAGATGACAGTTTTGATGTCGTTTATCTTAAGAACAAGGTTTGCTATGTCCTGTTTACCCTTTTGGCTTATACGAGAAACCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCTATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAAATATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAAATGCTAA | 450 | 0.3889 | MIKALSDDSFDVVYLKNKVCYVLFTLLAYTRNLYIGNLSRQVTRERLLNYFEGHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRNITVKYDLHNVEGGQPSVPARVALNANAPPYPMEALSMTPEYVAPKC | 149 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre13g03616 | 149 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 33 | 104 | IPR000504 | GO:0003723 | |
Trre13g03616 | 149 | Gene3D | - | 27 | 123 | IPR012677 | - | |
Trre13g03616 | 149 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 31 | 111 | IPR000504 | GO:0003723 | |
Trre13g03616 | 149 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 115 | IPR035979 | GO:0003676 | |
Trre13g03616 | 149 | PANTHER | OS02G0815200 PROTEIN | 31 | 111 | - | - | |
Trre13g03616 | 149 | SMART | rrm1_1 | 32 | 107 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre13g03616 | Trre-Chr13 | 43740192 | 43742970 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre13g03616 | 31 | 92 | C2H2 Transcription Factor Family | AT2G19380 | 35.484 | 1.50e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre13g03616 | K12741 | - | gmx:100776344 | 101.679 |