Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03616 ATGATCAAAGCTTTGTCAGATGACAGTTTTGATGTCGTTTATCTTAAGAACAAGGTTTGCTATGTCCTGTTTACCCTTTTGGCTTATACGAGAAACCTTTATATTGGAAACTTATCACGACAAGTAACAAGAGAAAGGCTGCTCAACTATTTTGAGGGGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCTATAAAAGACCTAGATCAAAGCACTCTTGGGGGAAGAAATATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCCTTATCCAATGGAAGCCTTATCTATGACTCCAGAATATGTTGCACCGAAATGCTAA 450 0.3889 MIKALSDDSFDVVYLKNKVCYVLFTLLAYTRNLYIGNLSRQVTRERLLNYFEGHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLGGRNITVKYDLHNVEGGQPSVPARVALNANAPPYPMEALSMTPEYVAPKC 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03616 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 104 IPR000504 GO:0003723
Trre13g03616 149 Gene3D - 27 123 IPR012677 -
Trre13g03616 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 111 IPR000504 GO:0003723
Trre13g03616 149 SUPERFAMILY RNA-binding domain, RBD 30 115 IPR035979 GO:0003676
Trre13g03616 149 PANTHER OS02G0815200 PROTEIN 31 111 - -
Trre13g03616 149 SMART rrm1_1 32 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03616 Trre-Chr13 43740192 43742970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03616 31 92 C2H2 Transcription Factor Family AT2G19380 35.484 1.50e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03616 K12741 - gmx:100776344 101.679