Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03615 ATGAATAACTTTGAAACTAAGCAGTTAGAGCTCTTCAATAATAGTGAACACTCAAAAATCACGTGGATTTGGATATATTCTTTACAAAATGTGAAATCAGCTCAGAAAGCATTGCTTCAACCTAGCAAGTTAATCGATGGAAGATTGACTCTATGTAAGTTAGCTCGTGATGAGGGCAAATGCAAAACTAGTGATACTTCGATGAGAAAGCTTTATATTGGAAACTTATCACCAAAAGTAACTGATGGAATGCTGCACGACTATTTTTGGAGCCATGGTGATATTGAGGAATGTTTAGTTGTATATGACAAGGATTCATATGTATCACGTGGATATGGTTTTGTTACATACAAGACAGTAGAGGCAGCAAAGGAAGTAAATGACCTACATCGCATGACTTTTGAGGGAAGAAATATAATTGTGAAATATGCTAATCCTCGCAAGGGTGGAGGTGGTCAGTCGTCTGTTCCTCCAATCAGTCCAACGGAAGCCTTACCTGTGCCTCCAGGATATACATACCCTCAAACAACTGCACCATATGCTGCATCTCATTATCCAAGTTTTCTCCGTGGATATCAAATACCTCCTCGGCATTAA 597 0.3886 MNNFETKQLELFNNSEHSKITWIWIYSLQNVKSAQKALLQPSKLIDGRLTLCKLARDEGKCKTSDTSMRKLYIGNLSPKVTDGMLHDYFWSHGDIEECLVVYDKDSYVSRGYGFVTYKTVEAAKEVNDLHRMTFEGRNIIVKYANPRKGGGGQSSVPPISPTEALPVPPGYTYPQTTAPYAASHYPSFLRGYQIPPRH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03615 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Trre13g03615 198 SUPERFAMILY RNA-binding domain, RBD 65 152 IPR035979 GO:0003676
Trre13g03615 198 SMART rrm1_1 70 142 IPR000504 GO:0003723
Trre13g03615 198 Gene3D - 52 156 IPR012677 -
Trre13g03615 198 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 180 - -
Trre13g03615 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03615 Trre-Chr13 43727713 43728985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03615 65 160 C2H2 Transcription Factor Family AT2G19380 32.653 2.85e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03615 K12741 - gmx:100776344 158.688