Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03605 ATGAGCATGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAAGCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGAAAATGTTGATCGCACCCAACAAAAGCTTAATGTTCGTGACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGGATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAGCTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACGAGTAACAGGAGAAAGGCTGCTCTACTATTTTAAGGGGCATGGTGATATAGAGGAATGTGTACTTGTACATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTCGAGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTTGTCAGCCGTCTGTTCCTGCAAGAGTTGCACCGAATGCTAATGCACCGAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTTTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGGAGTATTTCAGTTAGCTGATCAGGGCCTAACCAAAACAATCAGTAGTGCTACTGATCTTTCGAAGAGAATTCTATATATTGAAAACTTATCACGACAAGTAACAAGGGAAATACTGCTCAATTATTTTGAGAGGCATGGTGATATAGAGGAATGTGTACTTGCATATCAACGTCACGATGATTCAACTGTATCAAGGTCTGCCTTCGTTACATACATGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTCGAGGGAAAAACTATAACTATAAAATATGTTGATTTCCCCAATGGTGGAGGTCGTCAGCCGTCTTGTTCCTGCAAGAGGGTTTCACATACCTCTAAACCGATGCACCACATGCTACACCTCCTTATCCATACCCGCGAATTGTTGCACCACCTTATCCATACCCCCAAACAGTATGCTGCATCTCATAATCCAACCCTTCCCACTGCATCTTCTCCTCAGTATTATTATCATCCCAATCCATGA 1458 0.4211 MSMKKEMEDLEKNSGDFVSKEEIKVLIEALSKPQLVDLLSQLGSKYPSIAQEIESFENVDRTQQKLNVRDLDSKTLYSALQVHGEIEEGDVMLDRDTGKSAQSALNAPSSFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRRVTGERLLYYFKGHGDIEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLEGRTITVKYDLHNVEGCQPSVPARVAPNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAAFPYPYLRTTALYAASPYPTLLTGVFQLADQGLTKTISSATDLSKRILYIENLSRQVTREILLNYFERHGDIEECVLAYQRHDDSTVSRSAFVTYMTVEAAKNAIKDLDQSTLEGKTITIKYVDFPNGGGRQPSCSCKRVSHTSKPMHHMLHLLIHTRELLHHLIHTPKQYAASHNPTLPTASSPQYYYHPNP 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03605 485 SMART rrm1_1 138 213 IPR000504 GO:0003723
Trre13g03605 485 SMART rrm1_1 339 413 IPR000504 GO:0003723
Trre13g03605 485 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 72 287 - -
Trre13g03605 485 SMART rrm2_1 339 413 IPR003954 GO:0003676
Trre13g03605 485 SMART rrm2_1 138 213 IPR003954 GO:0003676
Trre13g03605 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 411 IPR000504 GO:0003723
Trre13g03605 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 211 IPR000504 GO:0003723
Trre13g03605 485 CDD RRM_SF 340 413 - -
Trre13g03605 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 417 IPR000504 GO:0003723
Trre13g03605 485 MobiDBLite consensus disorder prediction 464 485 - -
Trre13g03605 485 SUPERFAMILY RNA-binding domain, RBD 130 219 IPR035979 GO:0003676
Trre13g03605 485 Gene3D - 116 220 IPR012677 -
Trre13g03605 485 Gene3D - 324 435 IPR012677 -
Trre13g03605 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 217 IPR000504 GO:0003723
Trre13g03605 485 SUPERFAMILY RNA-binding domain, RBD 334 424 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03605 Trre-Chr13 43657567 43661611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03605 129 198 C2H2 Transcription Factor Family AT2G19380 35.714 4.88e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03605 K12741 - gmx:100776344 201.83