Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03604 ATGAGCATGAAGAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACTTTGTTTCGAAGGAAGAAATTAAAGTTTTGATTGAAGCTCTTTCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCACAAGAAATAGAAAGTTTTGAAAATGTTGATCGCACCCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGGATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAGCTTCATTGATGGAGTAAGTAAGTTATCTGATGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACGAGTAACAGGAGAAAGGCTGCTCTACTATTTTAAGGGGCATGGTGATATAGAGGAATGTGTACTTGTACATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTCGAGGGAAGAACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTTGTCAGCCGTCTGTTCCTGCAAGAGTTGCACCGAATGCTAATGCACCGAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCCCAAACAGGTGCACGATATGCCGCGTTTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGGAGTATTTCAGTTAGCTGATCAGGGCCTAACCAAAACAATCAGTAGTGCTACTGATCTTTCGAAGAGAATTCTATATATTGAAAACTTATCACGACAAGTAACAAGGGAAATACTGCTCAATTATTTTGAGAGGCATGGTGATATAGAGGAATGTGTACTTGCATATCAACGTCACGATGATTCAACTGTATCAAGGTCTGCCTTCGTTACATACATGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAAGCACTCTCGAGGGAAAAACTATAACTATAAAATATGTTGATTTCCCCAATGGTGGAGGTCGTCAGCCGTCTTGTTCCTGCAAGAGGGTTTCACATACCTCTAAACCGATGCACCACATGCTACACCTCCTTATCCATACCCGCGAATTGTTGCACCACCTTATCCATACCCCCAAACAGTATGCTGCATCTCATAATCCAACCCTTCCCACTGCATCTTCTCCTCAGTATTATTATCATCCCAATCCATGA 1425 0.4218 MSMKKEMEDLEKNSGDFVSKEEIKVLIEALSKPQLVDLLSQLGSKYPSIAQEIESFENVDRTQQKLNALQVHGEIEEGDVMLDRDTGKSAQSALNAPSSFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRRVTGERLLYYFKGHGDIEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQSTLEGRTITVKYDLHNVEGCQPSVPARVAPNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAAFPYPYLRTTALYAASPYPTLLTGVFQLADQGLTKTISSATDLSKRILYIENLSRQVTREILLNYFERHGDIEECVLAYQRHDDSTVSRSAFVTYMTVEAAKNAIKDLDQSTLEGKTITIKYVDFPNGGGRQPSCSCKRVSHTSKPMHHMLHLLIHTRELLHHLIHTPKQYAASHNPTLPTASSPQYYYHPNP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03604 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 406 IPR000504 GO:0003723
Trre13g03604 474 MobiDBLite consensus disorder prediction 453 474 - -
Trre13g03604 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 200 IPR000504 GO:0003723
Trre13g03604 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 400 IPR000504 GO:0003723
Trre13g03604 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 65 276 - -
Trre13g03604 474 SUPERFAMILY RNA-binding domain, RBD 119 208 IPR035979 GO:0003676
Trre13g03604 474 Gene3D - 313 424 IPR012677 -
Trre13g03604 474 SUPERFAMILY RNA-binding domain, RBD 323 413 IPR035979 GO:0003676
Trre13g03604 474 SMART rrm1_1 127 202 IPR000504 GO:0003723
Trre13g03604 474 SMART rrm1_1 328 402 IPR000504 GO:0003723
Trre13g03604 474 CDD RRM_SF 329 402 - -
Trre13g03604 474 SMART rrm2_1 328 402 IPR003954 GO:0003676
Trre13g03604 474 SMART rrm2_1 127 202 IPR003954 GO:0003676
Trre13g03604 474 Gene3D - 105 209 IPR012677 -
Trre13g03604 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 206 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03604 Trre-Chr13 43657567 43661611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03604 118 187 C2H2 Transcription Factor Family AT2G19380 35.714 4.42e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03604 K12741 - gmx:100776344 188.734