Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03603 ATGAGCAAGAAAAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACATTGTTGTTTCGAAGGAAGAAATTAGAGTTTTGATCGAAGCTCTTCCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAAGGTCCAAATATCCTTCAATTGCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGTTCGTCACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGACGATGAGGGCCTAACCAAAACAGCTAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAAACAAAGGCTGCTCAACTATTTTGAGGTGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATTTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAACCACTTTTTGGGAAAGTACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACTGAATGCTAATGCACCGAATGCTGCGCCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCTCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 1020 0.4147 MSKKKEMEDLEKNSGDIVVSKEEIRVLIEALPKPQLVDLLSQLRSKYPSIAEEIESFANVDRTQQKLNVRHLDSKTLYSALQVHGEIEEGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKTASSATDLSQRNLYIGNLSRQVTKQRLLNYFEVHGDVEECVLVHQYNKDLNISSRFGFVTYKTAEAAKNAIKDLDQTTFWESTITVKYDLHNVEGGQPSVPARVALNANALNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAASPYPYLRTTALYAASPYPTLLTAPSTQYYYYPQYYNHPNP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03603 339 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 218 IPR000504 GO:0003723
Trre13g03603 339 SUPERFAMILY RNA-binding domain, RBD 132 222 IPR035979 GO:0003676
Trre13g03603 339 PANTHER GEO13361P1-RELATED 130 313 - -
Trre13g03603 339 Gene3D - 116 221 IPR012677 -
Trre13g03603 339 SMART rrm1_1 139 214 IPR000504 GO:0003723
Trre13g03603 339 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 211 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03603 Trre-Chr13 43653911 43655649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03603 130 199 C2H2 Transcription Factor Family AT2G19380 34.286 1.38e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03603 K12741 - gmx:100802911 202.986