Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03602 ATGAGCAAGAAAAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACATTGTTGTTTCGAAGGAAGAAATTAGAGTTTTGATCGAAGCTCTTCCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAAGGTCCAAATATCCTTCAATTGCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAAATTGAGGAAGGGAATGTGATGCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGACGATGAGGGCCTAACCAAAACAGCTAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACAAGTAACAAAACAAAGGCTGCTCAACTATTTTGAGGTGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATTTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAACCACTTTTTGGGAAAGTACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACTGAATGCTAATGCACCGAATGCTGCGCCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGCCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCTGCACCACCACCTTATCCATACGCTCAAACAGGTGCACGATATGCCGCGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTGCATCTCCTTATCCAACTCTTCTCACTGCACCTTCTACTCAGTATTATTATTATCCTCAGTATTATAATCATCCCAACCCATGA 987 0.4154 MSKKKEMEDLEKNSGDIVVSKEEIRVLIEALPKPQLVDLLSQLRSKYPSIAEEIESFANVDRTQQKLNALQVHGEIEEGNVMLDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKTASSATDLSQRNLYIGNLSRQVTKQRLLNYFEVHGDVEECVLVHQYNKDLNISSRFGFVTYKTAEAAKNAIKDLDQTTFWESTITVKYDLHNVEGGQPSVPARVALNANALNANAPNAAPPYPYLQTDAPPFPYPQTGAPYAASPYPYPQTDASHAAPPPYPYAQTGARYAASPYPYLRTTALYAASPYPTLLTAPSTQYYYYPQYYNHPNP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03602 328 PANTHER GEO13361P1-RELATED 119 302 - -
Trre13g03602 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 207 IPR000504 GO:0003723
Trre13g03602 328 SUPERFAMILY RNA-binding domain, RBD 121 211 IPR035979 GO:0003676
Trre13g03602 328 SMART rrm1_1 128 203 IPR000504 GO:0003723
Trre13g03602 328 Gene3D - 105 210 IPR012677 -
Trre13g03602 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03602 Trre-Chr13 43653911 43655649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03602 119 188 C2H2 Transcription Factor Family AT2G19380 34.286 1.32e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03602 K12741 - gmx:100802911 190.274