Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03601 ATGAAGCAAGAAATGAAGGATTTGAAGAAAAGAAAAATAGATGAAGCAGGAAACAGTAATTTAGTTTCCAATGAAGAACTTAGATTTCTCATTGAATCTCTTGACAAACCTGCACTCGTTAATCTTCTTTATAAACTAGGTTCCAAAGATCCTTCAATTGCAGAAGAAATAGAAACTATTGCAGATGCTGATCAAACGCGTAGAAAGCTTTTTGTTCGTGATTTGTCCTTCGATACCACTGCACAATCTTTGCGGCAGGCATTTAGAGAATATGGTGAAATTGAGGATGGGAGAGTGATTTTTGATAAACACACTGGAATATCATGTAGATATGGATATATCATTTACAAACATACGAAATCAGCTCAAAATGCATTGCGTAAACGCTGCAAGTTAATTGATGGAAGATTGACTCTATGTATGTTAGCTCATGATGAGGTCATAAACAAAACTAGTGATACCTTTGGGAGAAAGCTTTTTATTCGAAGCTTATCACGACGAGTAACGAGTGGAATGCTGCACGACTATTTTGCGGGGCATGGTTATATTGAGGAATGTTCAGTTGTATATTACGACAATACAGATATATCATGTGGATATGCCTTCCTTACATACAAGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAACCACTCTTGAGGAGAAAAAAATTATGGTAAAATACTATGCTGATTCCAACAAGGGTGGAGTTGGTCAGTCGTCTGTTCCTGCAAGAGTGCTTGCAGGATATGATGCACCTCCTTATCCATACCCGCAATCTGATGCAGCATATGTTGCGCCTTCTTATCCATACCCTCAAATTGATGCATCATATGTTGCGCCTCTTTATCCATACCCCCAAACTAATGCACCATATGCTGCGCCTCCTTATCCATCTCAGTATCCAAGTCTTCAAACGCATGGTTATGGACAGGGACCTTATCCTCAGCATTACTATCAAAACCAGTGA 981 0.3904 MKQEMKDLKKRKIDEAGNSNLVSNEELRFLIESLDKPALVNLLYKLGSKDPSIAEEIETIADADQTRRKLFVRDLSFDTTAQSLRQAFREYGEIEDGRVIFDKHTGISCRYGYIIYKHTKSAQNALRKRCKLIDGRLTLCMLAHDEVINKTSDTFGRKLFIRSLSRRVTSGMLHDYFAGHGYIEECSVVYYDNTDISCGYAFLTYKTVEAAKNAIKDLDQTTLEEKKIMVKYYADSNKGGVGQSSVPARVLAGYDAPPYPYPQSDAAYVAPSYPYPQIDASYVAPLYPYPQTNAPYAAPPYPSQYPSLQTHGYGQGPYPQHYYQNQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03601 326 PANTHER GEO13361P1-RELATED 53 144 - -
Trre13g03601 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Trre13g03601 326 SMART rrm1_1 69 141 IPR000504 GO:0003723
Trre13g03601 326 SMART rrm1_1 158 231 IPR000504 GO:0003723
Trre13g03601 326 MobiDBLite consensus disorder prediction 303 318 - -
Trre13g03601 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 128 IPR000504 GO:0003723
Trre13g03601 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Trre13g03601 326 Gene3D - 59 147 IPR012677 -
Trre13g03601 326 SUPERFAMILY RNA-binding domain, RBD 66 236 IPR035979 GO:0003676
Trre13g03601 326 Gene3D - 148 250 IPR012677 -
Trre13g03601 326 MobiDBLite consensus disorder prediction 298 318 - -
Trre13g03601 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03601 Trre-Chr13 43650093 43651968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03601 153 216 C2H2 Transcription Factor Family AT2G19380 37.500 1.47e-06 47.8