Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03600 ATGAGTATGAAGCAAGAAATGAAGGATTTGAAGAAAAGAAAAATAGATGAAGCAGGAAACAGTAATTTAGTTTCCAATGAAGAACTTAGATTTCTCATTGAATCTCTTGACAAACCTGCACTCGTTAATCTTCTTTATAAACTAGGTTCCAAAGATCCTTCAATTGCAGAAGAAATAGAAACTATTGCAGATGCTGATCAAACGCGTAGAAAGCTTTTTGTTCGTGATTTGTCCTTCGATACCACTGCACAATCTTTGCGGCAGGCATTTAGAGAATATGGTGAAATTGAGGATGGGAGAGTGATTTTTGATAAACACACTGGAATATCATGTAGATATGGATATATCATTTACAAACATACGAAATCAGCTCAAAATGCATTGCGTAAACGCTGCAAGTTAATTGATGGAAGATTGACTCTATGTATGTTAGCTCATGATGAGGTCATAAACAAAACTAGTGATACCTTTGGGAGAAAGCTTTTTATTCGAAGCTTATCACGACGAGTAACGAGTGGAATGCTGCACGACTATTTTGCGGGGCATGGTTATATTGAGGAATGTTCAGTTGTATATTACGACAATACAGATATATCATGTGGATATGCCTTCCTTACATACAAGACAGTGGAGGCTGCAAAGAATGCCATAAAAGACCTAGATCAAACCACTCTTGAGGAGAAAAAAATTATGGTAAAATACTATGCTGATTCCAACAAGGGTGGAGTTGGTCAGTCGTCTGTTCCTGCAAGAGTGCTTGCAGGATATGATGCACCTCCTTATCCATACCCGCAATCTGATGCAGCATATGTTGCGCCTTCTTATCCATACCCTCAAATTGATGCATCATATGTTGCGCCTCTTTATCCATACCCCCAAACTAATGCACCATATGCTGCGCCTCCTTATCCATCTCAGTATCCAAGTCTTCAAACGCATGGTTATGGACAGGGACCTTATCCTCAGCATTACTATCAAAACCAGTGA 987 0.3901 MSMKQEMKDLKKRKIDEAGNSNLVSNEELRFLIESLDKPALVNLLYKLGSKDPSIAEEIETIADADQTRRKLFVRDLSFDTTAQSLRQAFREYGEIEDGRVIFDKHTGISCRYGYIIYKHTKSAQNALRKRCKLIDGRLTLCMLAHDEVINKTSDTFGRKLFIRSLSRRVTSGMLHDYFAGHGYIEECSVVYYDNTDISCGYAFLTYKTVEAAKNAIKDLDQTTLEEKKIMVKYYADSNKGGVGQSSVPARVLAGYDAPPYPYPQSDAAYVAPSYPYPQIDASYVAPLYPYPQTNAPYAAPPYPSQYPSLQTHGYGQGPYPQHYYQNQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03600 328 Gene3D - 150 252 IPR012677 -
Trre13g03600 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 230 IPR000504 GO:0003723
Trre13g03600 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 130 IPR000504 GO:0003723
Trre13g03600 328 SMART rrm1_1 71 143 IPR000504 GO:0003723
Trre13g03600 328 SMART rrm1_1 160 233 IPR000504 GO:0003723
Trre13g03600 328 SUPERFAMILY RNA-binding domain, RBD 68 238 IPR035979 GO:0003676
Trre13g03600 328 MobiDBLite consensus disorder prediction 305 320 - -
Trre13g03600 328 Gene3D - 61 149 IPR012677 -
Trre13g03600 328 PANTHER GEO13361P1-RELATED 55 146 - -
Trre13g03600 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 168 IPR000504 GO:0003723
Trre13g03600 328 MobiDBLite consensus disorder prediction 300 320 - -
Trre13g03600 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03600 Trre-Chr13 43650093 43651974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03600 155 218 C2H2 Transcription Factor Family AT2G19380 37.500 1.44e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03600 K12741 - gmx:100802911 251.906