Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03598 ATGATCGACTTTAGAAAACTCAGATTAACATTCACATTTTTCAATTTCACCCTAAATCACACCAATCTTAAACCCTCACTAAACCCTAGATTTTATAGCACAAAAAATTCACTTCAATTAGATGTAAAACCCAAACTTGGATCAAAATCAACCATCAAAGAAGCTCAATCTGCATTGCTAGAGTATCTTCATTCCACAAGAAGCTTGCAATTCTTAGACGCAGATAACATGTGCAAAAACTCACCTTTTTTCCTTCAAAATCTCGTCGAGAAAACCCTAAAAAACGAGAATACGATTAACGCAAAACGGTTAATTTCTCGCTACCTTCGTTACCATCCCATTAACGAATTCGAACCCTTTTTCGAGAGTTTAGGTTTGAAGCCTTCTGAATACGCACATTTGCTTCCTCGTGGTTTGATTTTTCTTAACGATGATCCTCTTTTGATGGAGAATTATCATATTCTGTGTAATTATGGAGTTGCTCGATCAAAAATGGGGAAAATTTTCAAATTAGCGCCTCAAGTTTTAAGCTTTGAAAATGGGGTTTTGAGTTTGAAGCTTAAGGCTTATGAAAAATTGGGTGTTTCACCTTCCATTTTGATGAATGCTGTTGCTGTATGTCCATGTCTTTTGGTTGGTGATGTTAATTTTGAATTTGTTAAGGTTGTGGAGATTTTGAAGAATATTGCTGCTAAGGGTGGTGATGGTGATGTTGATAGTGGTTGGATTCAGTGGCATTTTTTGGATGAGGCTTCCTGTAAGTGGAGTTTAATGCGCGAGCTTTTGTGCTTGCTATCTCATGGTGGTTTCAGTGAGGAACAGTTGGCTGAGATTATTCGTCGTAGTCCTTGCGTTGTTTTTGAGGAATCAGGAGGTAAGACACTCTCTATGATTGGCTTTTTGACCAAATTTGGATTGTCATTGAACCAGATTGCACCTGTGTTTCTGGAGTTTCCGCAGATTCGGATGGTCAAGTTTTTTGCTAACTTGAGGATGTGTTTTCAGCTTTTGACTGAAATTGAGATGGAACCTGCAGAGATTGGAAAGATTTTCCAGTCTCACACATTATTTATTGGTTCCTCCACTCTCAAGACTACGAAGAGTTTGCTTGGCTGCTTGAATGTCGGCAAGAAACGTCTCTGCAGAATTGTGCAGGATAATCCTCTTGTAATGAAGAATTGGGTTTTGGGAAAGAGAGTTAAGCCTTTAGTTAGCTTAAGGGAGGCAGAAGAGGAGAAATCGAAGGCGGGGAAGATGGAGTTCTTGTTGCGCTTAGGATATGTGGAAAACACGAAACAAATGAATCGGGCATTTAAGATGTACAGAGGTAAGGGAGCTGAGCTTCAAGAAAGATTTGATTTTATTGTTAAAGCTGGCTTGACACGTGACGAAGTTCGTAGAATGATTAGAGTTTCCCCTCAGATTCTCAATCAGAACACAGACACGGTCAAGATGAAGATTGAGTATCTTGTAAAACAAGGATATTCTATATCCGATTTAGTGAGTTTCCCATCTTATCTTTCCTATAAATCTCAAAGAGTTAAGCTTAGGTTGTCAATGTATAAATGGCTCATAGACCATGGGGCCACAGAGCCCGGGCTTGCTTTGAGCACCTTAGTTGCATGCACCGATAGACTATTCTTACAAAGTTATGTAACTAAACATCCATCTGATGGGAATGTTAGCTTGATACGCCGTCTTCAATCTGAAAATTGCAACTACTAG 1725 0.3901 MIDFRKLRLTFTFFNFTLNHTNLKPSLNPRFYSTKNSLQLDVKPKLGSKSTIKEAQSALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVEKTLKNENTINAKRLISRYLRYHPINEFEPFFESLGLKPSEYAHLLPRGLIFLNDDPLLMENYHILCNYGVARSKMGKIFKLAPQVLSFENGVLSLKLKAYEKLGVSPSILMNAVAVCPCLLVGDVNFEFVKVVEILKNIAAKGGDGDVDSGWIQWHFLDEASCKWSLMRELLCLLSHGGFSEEQLAEIIRRSPCVVFEESGGKTLSMIGFLTKFGLSLNQIAPVFLEFPQIRMVKFFANLRMCFQLLTEIEMEPAEIGKIFQSHTLFIGSSTLKTTKSLLGCLNVGKKRLCRIVQDNPLVMKNWVLGKRVKPLVSLREAEEEKSKAGKMEFLLRLGYVENTKQMNRAFKMYRGKGAELQERFDFIVKAGLTRDEVRRMIRVSPQILNQNTDTVKMKIEYLVKQGYSISDLVSFPSYLSYKSQRVKLRLSMYKWLIDHGATEPGLALSTLVACTDRLFLQSYVTKHPSDGNVSLIRRLQSENCNY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03598 574 PANTHER CGI-12 PROTEIN-RELATED 262 554 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 Pfam mTERF 263 425 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 Pfam mTERF 444 547 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 Gene3D Transcription termination factor 3, mitochondrial 292 561 IPR038538 -
Trre13g03598 574 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 SMART mt_12 381 428 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 SMART mt_12 201 232 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 SMART mt_12 166 196 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 SMART mt_12 466 496 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 SMART mt_12 497 530 IPR003690 GO:0003690|GO:0006355
Trre13g03598 574 Gene3D Transcription termination factor 3, mitochondrial 79 291 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03598 Trre-Chr13 43644966 43647352 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre13g03598 mTERF 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03598 - - tpra:123891547 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03598 13 43644966 43647352 Trre13g03598 13 43644966 43647352 ECH