Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03595 ATGGATTCAGGAAACTCTTGTTCAGAAGAGTCCTCACTAAATGGCTTAAAATTTGGCCAAAGAATCTATTTTGAAGACATGTCTCTTCCAAATGCAAACTCCTCTGTTGCTTCTTCTTCTTCTTCTTCTGGTTCAAGTTCAAAGAAAGTAAAAAGTGGGTCAGTTCAACATTCTCAACCTCCTAGGTGTCAAGTTGAAGGTTGTAAACTAGATCTGACTCATGTTAAAGCTTACTATTCTAGACATAAAGTTTGTTCCATGCATTCTAAATCTCCTACTGTTACTGTTTCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGCCGAGTTTGATCTAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAACGAACGTCGTAGAAAGCCCCCACCCAACTCTCTCTTAACCTCACGTTTTGCCAGACTTTCTTCATCTGTTTTTGATAACAGCGGCAGAGGTGGCAGCTTCCTGATCGAATTTGATTCACACCAGAAACTTAGTCTGAAAAATACACTTCCATCACATGGAAATCAAACCACAACACTTGGTTGGCCTTGGCCAGGTAACTCGGAGTCGTCGTCTGACAACCTTTTCCTGCAAGGTTCAATGGGCGGGACAAGCTTCGCTGGTGCGAGGCATCCTCCCGAGGAAAGTTACACTGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTTCTAGAAACACAGCAACAAGTCACGGATTGAACAACATGTTGAATTTCAATAATGGGACTCCCATGACACAACTTGCTACATCATCTCATGGTGTAGCCATGCATCATCTCATTGATCAAGGTAACCTTTCTCATGAGACTGTTCCTGATCTTGGTCCAGGTCATATTTCGCAGCCCCTTGATAGCCAACTTCGTGGTGAGCTTGATCTGTCGCAGCAAGAAAGGAGGCATTATATGGATGTAGAACACTCGAGGGCCTATGAGTCTTCTCAATGGTCACTGTAA 1026 0.4337 MDSGNSCSEESSLNGLKFGQRIYFEDMSLPNANSSVASSSSSSGSSSKKVKSGSVQHSQPPRCQVEGCKLDLTHVKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDLGKRSCRRRLAGHNERRRKPPPNSLLTSRFARLSSSVFDNSGRGGSFLIEFDSHQKLSLKNTLPSHGNQTTTLGWPWPGNSESSSDNLFLQGSMGGTSFAGARHPPEESYTGVTDSSCALSLLSNQTWGSSRNTATSHGLNNMLNFNNGTPMTQLATSSHGVAMHHLIDQGNLSHETVPDLGPGHISQPLDSQLRGELDLSQQERRHYMDVEHSRAYESSQWSL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03595 341 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Trre13g03595 341 MobiDBLite consensus disorder prediction 32 61 - -
Trre13g03595 341 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Trre13g03595 341 Pfam SBP domain 63 136 IPR004333 GO:0003677
Trre13g03595 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 276 IPR044817 GO:0003677
Trre13g03595 341 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Trre13g03595 341 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03595 Trre-Chr13 43615238 43618206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03595 16 341 SBP-box Gene Family AT2G42200 42.513 3.51e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre13g03595 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03595 - - mtr:11430800 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03595 13 43615238 43618206 Trre13g03595 13 43615238 43618206 ECH
Trre13g03595 13 43615238 43618206 Trre1g02135 1 16999134 17000418 PCT