Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03594 ATGATTCGCAACTTCCTTTACCTGATTCTCAATCTCGTTGTCTTCTCGTCTATTTTCATTTCTCAGAGCTTGGCGTTAACTCGTTCACCCGAAGTTTGGGCTCTACAAGATCTATACAAGTCCTTGAACTACTCAGAGGCGCTTCGAGGATGGAATGGTAGTGATCCTTGTGAGGAGTCTTGGACAGGTGTTGCTTGTTCTGGGTCGTCGGTTATTCAACTAAAAATTCAAGGGTTAAACCTCACTGGGAGTCTGTGCAGGCTTTATAATCTACGAAATTTGAAGCAGCTTGATGTCAGTTCTAATAACATAGTGGGCGAAATACCATTCGGTTTACCTCCTAATGTCACTCATATGAATTTAAGCCACAATTTCTTAATTGGACCCATCGGTGATGTATTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTGTCAGGAGATCTACCAAGATCATTTGGTTCCTTGACAAACCTTGCTAGATTGTTCTTGCAGAATAACAGACTCACTGGATCAGTCACCTACCTGGCCGAACTTCCACTTACAGATTTGAACATTCAAGATAATCTGTTCAGTGGTCTTCTTCCACATAATTTTCAGTACATAAAAAATTCCTGGATTGGTGGGAATAAATTCCATGCAGCTGGCAACCCTCCTCCATGGACTCCTCCTGTGGAGACATTAACAGTTGAGCATAATATTAGTCGCCCACCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAAAGTAAGTGAGTACAAGCATAAGAAAAAACAATTAGGTCCTGGAGCAATTGCTTTTATGGTTGGTGGAGGAACACTAATGGCTACAGGTATCGCACTCCTTGTTGCGTTCCATTTGAACAAACTGCGTGCTCAAAGCCAGAACTTGAATTACTCCGAAAGCAATGACATATCTTTGCATTCTCATCCAACCAGTGCAAGTATAGTGGTCTCTTCTTCCGAACTAGACAACGTGCCACTACTCCCACCTGCTGACGTTGCATCTCCTTTGGGTCCAATGAGGTTTCCTTTCCCGTGCCATAACAACGTGGTGGAGGAATCATCGAGAAGAAGTTTTTCCAAAAGAGGCAGATCCACTGGAAGGACAAAAATCTATACCATAGGGGAGCTTCAGCTGGCTACTAACTACTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTCCTGATGGCAAAATTTTGGCCGTGAAGATCATAAACATGGCGGGTTTGTCCTACAGAGAAGAGGAAAAGTTCTTGGATGTCATTTGCACGGCTTCCAAATTGAAGCACCCCAACATCATACAACTCAATGGTTACTGTTTAGAGCATGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTAAACGATGCTCTTCATGGTGGAGCATGTGAACCACTATCGTGGGTCCAACGCCTTCAAATTGCTCTAGCTGTTGCTCAGGCTCTGGACTATTTGCACACGGCGTGCTGCCCTCCTGTGGCCCATGGAAACTTGAAGGCGGCCAATATTCTGCTGGATGAAAATTTGATGCCTCATGTTTGTGACAGTAGCTTGGCTATTTTGAGACCACTGGTGAAGAGCAATCAAGTTAAAATTCCAGCTGCTGATCAATTTGGTAACTTTTGGAAACAGGCTAATGAGACTACAATTGTAGAGAGAGGATATATTCCACCTGACCATGGCCAGACAGGATTCAGCAGAAGGAGAGATGTCTTTGCCTTTGGGGTATTACTTCTGGAATTGTTAACAGGAAGGAAAGCTTTTGACGGTGCCAGACCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCCCCTAGGCTTTGCGATAGTGCGAGTTTGGAAAAGATAGTGGATCCCAGTATGGAAACAACATTTTCATCCAAGGTTCTTTCTCTTTATGCTGATATCATCTACCTCTGTATACAGCCTTCGAAACAACACCGTCCCCCAATGTCTGAAGTTGTGAGCTCTCTTATATCTTTTTCTCAGAAGTTCAACTTTGCTAAGAGCGGTGTAACAGATGCTGCCGAACTTTTTGAGAAGTCTTTCCGTTCAGCGAACACAGGCTTCATAAATTCGCCAACAGCGAGCCACCTATCAGCCTGA 2172 0.4332 MIRNFLYLILNLVVFSSIFISQSLALTRSPEVWALQDLYKSLNYSEALRGWNGSDPCEESWTGVACSGSSVIQLKIQGLNLTGSLCRLYNLRNLKQLDVSSNNIVGEIPFGLPPNVTHMNLSHNFLIGPIGDVFTGLDNLKEMDLSYNNLSGDLPRSFGSLTNLARLFLQNNRLTGSVTYLAELPLTDLNIQDNLFSGLLPHNFQYIKNSWIGGNKFHAAGNPPPWTPPVETLTVEHNISRPPTTNTNAIKNYAPPKVSEYKHKKKQLGPGAIAFMVGGGTLMATGIALLVAFHLNKLRAQSQNLNYSESNDISLHSHPTSASIVVSSSELDNVPLLPPADVASPLGPMRFPFPCHNNVVEESSRRSFSKRGRSTGRTKIYTIGELQLATNYFNEGNLLGEGSLGPVYKAKFPDGKILAVKIINMAGLSYREEEKFLDVICTASKLKHPNIIQLNGYCLEHGEHLLVYDYFGNLTLNDALHGGACEPLSWVQRLQIALAVAQALDYLHTACCPPVAHGNLKAANILLDENLMPHVCDSSLAILRPLVKSNQVKIPAADQFGNFWKQANETTIVERGYIPPDHGQTGFSRRRDVFAFGVLLLELLTGRKAFDGARPREEQYLVKWASPRLCDSASLEKIVDPSMETTFSSKVLSLYADIIYLCIQPSKQHRPPMSEVVSSLISFSQKFNFAKSGVTDAAELFEKSFRSANTGFINSPTASHLSA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03594 723 SUPERFAMILY L domain-like 47 207 - -
Trre13g03594 723 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre13g03594 723 Gene3D Phosphorylase Kinase; domain 1 356 470 - -
Trre13g03594 723 SUPERFAMILY Protein kinase-like (PK-like) 369 680 IPR011009 -
Trre13g03594 723 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Trre13g03594 723 Gene3D Transferase(Phosphotransferase) domain 1 472 704 - -
Trre13g03594 723 ProSiteProfiles Protein kinase domain profile. 393 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03594 723 Gene3D Ribonuclease Inhibitor 28 254 IPR032675 -
Trre13g03594 723 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 116 229 - -
Trre13g03594 723 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 358 470 - -
Trre13g03594 723 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 681 IPR046959 -
Trre13g03594 723 FunFam Leucine-rich repeat receptor-like protein kinase 471 691 - -
Trre13g03594 723 Pfam Protein kinase domain 394 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03594 Trre-Chr13 43607735 43613114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03594 9 723 Strubbelig Receptor Gene Family AT5G06820 49.530 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre13g03594 Pkinase 3.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03594 - - mtr:11428201 1084.32