Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03593 ATGATTCGCAACTTCCTTTACCTGATTCTCAATCTCGTTGTCTTCTCGTCTATTTTCATTTCTCAGAGCTTGGCGTTAACTCGTTCACCCGAAGTTTGGGCTCTACAAGATCTATACAAGTCCTTGAACTACTCAGAGGCGCTTCGAGGATGGAATGGTAGTGATCCTTGTGAGGAGTCTTGGACAGGTGTTGCTTGTTCTGGGTCGTCGGTTATTCAACTAAAAATTCAAGGGTTAAACCTCACTGGGAGTCTGTGCAGGCTTTATAATCTACGAAATTTGAAGCAGCTTGATGTCAGTTCTAATAACATAGTGGGCGAAATACCATTCGGTTTACCTCCTAATGTCACTCATATGAATTTAAGCCACAATTTCTTAATTGGACCCATCGGTGATGTATTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTGTCAGGAGATCTACCAAGATCATTTGGTTCCTTGACAAACCTTGCTAGATTGTTCTTGCAGAATAACAGACTCACTGGATCAGTCACCTACCTGGCCGAACTTCCACTTACAGATTTGAACATTCAAGATAATCTGTTCAGTGGTCTTCTTCCACATAATTTTCAGTACATAAAAAATTCCTGGATTGGTGGGAATAAATTCCATGCAGCTGGCAACCCTCCTCCATGGACTCCTCCTGTGGAGACATTAACAGTTGAGCATAATATTAGTCGCCCACCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAAAGTAAGTGAGTACAAGCATAAGAAAAAACAATTAGGTCCTGGAGCAATTGCTTTTATGGTTGGTGGAGGAACACTAATGGCTACAGGTATCGCACTCCTTGTTGCGTTCCATTTGAACAAACTGCGTGCTCAAAGCCAGAACTTGAATTACTCCGAAAGCAATGACATATCTTTGCATTCTCATCCAACCAGTGCAAGTATAGTGGTCTCTTCTTCCGAACTAGACAACGTGCCACTACTCCCACCTGCTGACGTTGCATCTCCTTTGGGTCCAATGAGGTTTCCTTTCCCGTGCCATAACAACGTGGTGGAGGAATCATCGAGAAGAAGTTTTTCCAAAAGAGGCAGATCCACTGGAAGGACAAAAATCTATACCATAGGGGAGCTTCAGCTGGCTACTAACTACTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTCCTGATGGCAAAATTTTGGCCGTGAAGATCATAAACATGGCGGGTTTGTCCTACAGAGAAGAGGAAAAGTTCTTGGATGTCATTTGCACGGCTTCCAAATTGAAGCACCCCAACATCATACAACTCAATGGTTACTGTTTAGAGCATGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTAAACGATGCTCTTCATGGTGGAGCATGTGAACCACTATCGTGGGTCCAACGCCTTCAAATTGCTCTAGCTGTTGCTCAGGCTCTGGACTATTTGCACACGGCGTGCTGCCCTCCTGTGGCCCATGGAAACTTGAAGGCGGCCAATATTCTGCTGGATGAAAATTTGATGCCTCATGTTTGTGACAGTAGCTTGGCTATTTTGAGACCACTGGTGAAGAGCAATCAAGTTAAAATTCCAGCTAATGAGACTACAATTGTAGAGAGAGGATATATTCCACCTGACCATGGCCAGACAGGATTCAGCAGAAGGAGAGATGTCTTTGCCTTTGGGGTATTACTTCTGGAATTGTTAACAGGAAGGAAAGCTTTTGACGGTGCCAGACCAAGGGAGGAGCAATATCTGGTGAAATGGGCTTCCCCTAGGCTTTGCGATAGTGCGAGTTTGGAAAAGATAGTGGATCCCAGTATGGAAACAACATTTTCATCCAAGGTTCTTTCTCTTTATGCTGATATCATCTACCTCTGTATACAGCCTTCGAAACAACACCGTCCCCCAATGTCTGAAGTTGTGAGCTCTCTTATATCTTTTTCTCAGAAGTTCAACTTTGCTAAGAGCGGTGTAACAGATGCTGCCGAACTTTTTGAGAAGTCTTTCCGTTCAGCGAACACAGGCTTCATAAATTCGCCAACAGCGAGCCACCTATCAGCCTGA 2139 0.4338 MIRNFLYLILNLVVFSSIFISQSLALTRSPEVWALQDLYKSLNYSEALRGWNGSDPCEESWTGVACSGSSVIQLKIQGLNLTGSLCRLYNLRNLKQLDVSSNNIVGEIPFGLPPNVTHMNLSHNFLIGPIGDVFTGLDNLKEMDLSYNNLSGDLPRSFGSLTNLARLFLQNNRLTGSVTYLAELPLTDLNIQDNLFSGLLPHNFQYIKNSWIGGNKFHAAGNPPPWTPPVETLTVEHNISRPPTTNTNAIKNYAPPKVSEYKHKKKQLGPGAIAFMVGGGTLMATGIALLVAFHLNKLRAQSQNLNYSESNDISLHSHPTSASIVVSSSELDNVPLLPPADVASPLGPMRFPFPCHNNVVEESSRRSFSKRGRSTGRTKIYTIGELQLATNYFNEGNLLGEGSLGPVYKAKFPDGKILAVKIINMAGLSYREEEKFLDVICTASKLKHPNIIQLNGYCLEHGEHLLVYDYFGNLTLNDALHGGACEPLSWVQRLQIALAVAQALDYLHTACCPPVAHGNLKAANILLDENLMPHVCDSSLAILRPLVKSNQVKIPANETTIVERGYIPPDHGQTGFSRRRDVFAFGVLLLELLTGRKAFDGARPREEQYLVKWASPRLCDSASLEKIVDPSMETTFSSKVLSLYADIIYLCIQPSKQHRPPMSEVVSSLISFSQKFNFAKSGVTDAAELFEKSFRSANTGFINSPTASHLSA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03593 712 Gene3D Phosphorylase Kinase; domain 1 356 470 - -
Trre13g03593 712 Gene3D Transferase(Phosphotransferase) domain 1 472 693 - -
Trre13g03593 712 Pfam Protein kinase domain 394 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03593 712 FunFam Leucine-rich repeat receptor-like protein kinase 471 680 - -
Trre13g03593 712 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 670 IPR046959 -
Trre13g03593 712 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre13g03593 712 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Trre13g03593 712 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 358 470 - -
Trre13g03593 712 SUPERFAMILY Protein kinase-like (PK-like) 369 669 IPR011009 -
Trre13g03593 712 Gene3D Ribonuclease Inhibitor 28 254 IPR032675 -
Trre13g03593 712 ProSiteProfiles Protein kinase domain profile. 393 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03593 712 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 116 229 - -
Trre13g03593 712 SUPERFAMILY L domain-like 47 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03593 Trre-Chr13 43607735 43613114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03593 9 712 Strubbelig Receptor Gene Family AT5G06820 50.272 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre13g03593 Pkinase 2.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03593 - - mtr:11428201 1092.8