Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03591 ATGGCAGGAACTGCTATCTACACCTCCTGCAACTTAGGGAGATGTAGGTTGGTATTAAAAAGTCACAATGGAGGAAGGAGCATGCAGCAGCCAGGGAAGCTAGTATCTCAATGTCAAATGAGAAAAAGAAACTTTACAATAAAAGCAGAAGTGAAATTTGTAACAGCTGATGATGCTAAAGAACTTGTAGCAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAGTTTGAACGAGCTCACATTAAAACATGTTATCATGTCCCTCTTTTTGTTGAAAATACTGACAATGATCCTGGTACATTCTTATTAAGGACTGTACACAATAATTTTTCTGGGTTGTTCTTTGGGATACCATTCACTAGGCCAAATCCTGATTTTGTACAATCTGTCAAGAGTCAGATACAGCCTGAAACTAAACTTTTGATTGTATGTCAGGAAGGATTAAGGTCGACCGCAGCAGCAAATAAGTTAGAGGAAGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAATCTGTGAAACCAGGAACATTTGAATCTGTCGGCACCACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCGGTTTTAGGAACCGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCTGAGAAGCTGATCCAACTAGTCCCTGCAGGCTAA 717 0.3975 MAGTAIYTSCNLGRCRLVLKSHNGGRSMQQPGKLVSQCQMRKRNFTIKAEVKFVTADDAKELVAVDGYNVLDVRDKSQFERAHIKTCYHVPLFVENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSTAAANKLEEAGFQNVACITSGLQSVKPGTFESVGTTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPAG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03591 238 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 176 IPR036873 -
Trre13g03591 238 CDD RHOD 58 179 - -
Trre13g03591 238 Pfam Rhodanese-like domain 55 178 IPR001763 -
Trre13g03591 238 Gene3D - 37 184 IPR036873 -
Trre13g03591 238 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 9, CHLOROPLASTIC 12 237 IPR044615 -
Trre13g03591 238 ProSiteProfiles Rhodanese domain profile. 64 187 IPR001763 -
Trre13g03591 238 SMART rhod_4 54 184 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03591 Trre-Chr13 43599446 43601068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03591 4 231 Sulfurtransferasese or Rhodanese AT2G42220 65.351 8.70e-112 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03591 - - adu:107492903 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03591 13 43599446 43601068 Trre13g03591 13 43599446 43601068 ECH