Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03587 ATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAACGGTCCCTTACCTGATTTTTTCAACAAGCTTGAGTCACTAAAAGTCTTAAACTTGGATAAGAACAAACTTACGGGGTTAGTTCCACGTGAACTCCTTGAGAGATCAAAAACAGATTCACTATCACTTAGCGTGGATGATAATCCTGGTCTTTGTACGAAGAAATCATGTGGAAACAAGAGTTTGTTTGTACCATTGATTGCATCATTTTCAGCATTATTTGTTGTAATCCTCTTTATTTGTATTGGATTTTGGATATTCAGAAGACATAAAGTTACGTCTAAAAATTCTAAGAAAAGGGGATCACTTGAAACAAAACATCAGGCATTCAGTTACACTGAAATTCTCAATATTACTGATAACTTCAAAACTATTGTTGGAGAAGGTGGATTTGGAAAAGTTTATGTCGGCGTTCTACAAAATCACACTCAAGTTGCGGTTAAGATACTTTCAGCATCCTCAGTGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTCTAATGATTGTTCATCATAGAAATCTGGTCTCTCTCATTGGATTTTGTGATGAAGATGAAATCAAAGCATTGGTTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTGTCAGTGAAAAATACAAATATCTTAAAATGGAATGAGAGGCTTAACATTGCAGTTGATGCAGCACATGGATTGGAATATCTGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCCAACATACTACTAGATGACAACATGCATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGCTTTTGGTAATGATATTGATTCTCATATATCAACGCGCCCTGCCGGTACACTTGGTTACGTTGATCCTGAATATCAGAGAACAGGAAACACAAATAAAAAAAATGATGTGTATAGCTTTGGGATAGTTCTATTTGTGTTGATCACCGGTCGTCAAGCAATATTAAGAGAAAATGGAGAAAATTATCACATACTTAAATGGGCTGTTCCCATAATTGAAAGTGGAGATATTCAAAATGTTGTTGATCCAAAGTTGCAGGGCGAATTCCGCATTGATTCAGCATGGAAAGCTGTAGAGATTGCTATGTCTTGCACTTCACCAAATGCAGATCAAAGGCCTGACATGAGCCAAATATTAGCAGATTTAAAGGAATGTCTATCTTTGGAAATGGTTCAGAGAACACACTGTGGAAGCACAAGAGATAAACATGATTTGATCTCTGCGGCAACCATATCAGAAACCACTCTTTTAGCTAGATAA 1317 0.3622 MLQYLDLSNNSLNGPLPDFFNKLESLKVLNLDKNKLTGLVPRELLERSKTDSLSLSVDDNPGLCTKKSCGNKSLFVPLIASFSALFVVILFICIGFWIFRRHKVTSKNSKKRGSLETKHQAFSYTEILNITDNFKTIVGEGGFGKVYVGVLQNHTQVAVKILSASSVQGYKEFQSEAQLLMIVHHRNLVSLIGFCDEDEIKALVYEYMANGNLQQHLSVKNTNILKWNERLNIAVDAAHGLEYLHNGCKPPIMHRDLKPSNILLDDNMHAKIADFGLSRAFGNDIDSHISTRPAGTLGYVDPEYQRTGNTNKKNDVYSFGIVLFVLITGRQAILRENGENYHILKWAVPIIESGDIQNVVDPKLQGEFRIDSAWKAVEIAMSCTSPNADQRPDMSQILADLKECLSLEMVQRTHCGSTRDKHDLISAATISETTLLAR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03587 438 PANTHER OS07G0107800 PROTEIN-RELATED 2 405 - -
Trre13g03587 438 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 208 414 - -
Trre13g03587 438 Pfam Protein tyrosine and serine/threonine kinase 134 401 IPR001245 GO:0004672|GO:0006468
Trre13g03587 438 FunFam Leucine-rich repeat receptor-like protein kinase 108 207 - -
Trre13g03587 438 Pfam Leucine rich repeat 2 56 IPR001611 GO:0005515
Trre13g03587 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Trre13g03587 438 CDD STKc_IRAK 138 403 - -
Trre13g03587 438 SUPERFAMILY Protein kinase-like (PK-like) 114 401 IPR011009 -
Trre13g03587 438 Gene3D Transferase(Phosphotransferase) domain 1 208 424 - -
Trre13g03587 438 Gene3D Ribonuclease Inhibitor 1 71 IPR032675 -
Trre13g03587 438 ProSiteProfiles Protein kinase domain profile. 132 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g03587 438 ProSitePatterns Protein kinases ATP-binding region signature. 138 160 IPR017441 GO:0005524
Trre13g03587 438 PRINTS Leucine-rich repeat signature 2 15 - -
Trre13g03587 438 PRINTS Leucine-rich repeat signature 23 36 - -
Trre13g03587 438 Gene3D Phosphorylase Kinase; domain 1 113 207 - -
Trre13g03587 438 SUPERFAMILY L domain-like 2 73 - -
Trre13g03587 438 SMART serkin_6 132 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03587 Trre-Chr13 43584941 43586954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03587 2 405 Receptor kinase-like Gene Family AT2G19230 51.951 1.20e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre13g03587 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03587 - - mtr:25500366 660.603