Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03585 ATGAGCAAGAAAAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACATTGTTGTTTCGAAGGAAGAAATTAGAGTTTTGATCGAAGCTCTTCCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGCATTGCAAGTTCATGGAGAGATTGAGGAAGGGAATGTGATTCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGACGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACGAGTAACAGAAGAAAGGCTGCTCAACTATTTTGAGGTGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATTAAAGACCTAGATCAAACCACTCTTTGGGGAACAACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCATCCAATGGAAACCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATTCACCGAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGTCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCAGCACCACCTTATCCATACGCCCAAATAGGTGCACGATATGCCGTGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTACATCTCCTTATCCAACTCTTCTCACTGCACCTTTTACTCAGTATTATTATTATTATCCTCAGTATTATAATCCCAACCCATGA 1029 0.414 MSKKKEMEDLEKNSGDIVVSKEEIRVLIEALPKPQLVDLLSQLGSKYPSIAEEIESFANVDRTQQKLNALQVHGEIEEGNVILDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRRVTEERLLNYFEVHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQTTLWGTTITVKYDLHNVEGGQPSVPARVALNANAPHPMETLSMTPEYVAPNANSPNAAPPYPYLQTDAPPFPYPQTGAPYVASPYPYPQTDASHAAPPYPYAQIGARYAVSPYPYLRTTALYATSPYPTLLTAPFTQYYYYYPQYYNPNP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03585 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 207 IPR000504 GO:0003723
Trre13g03585 342 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 112 303 - -
Trre13g03585 342 Gene3D - 105 210 IPR012677 -
Trre13g03585 342 SMART rrm1_1 128 203 IPR000504 GO:0003723
Trre13g03585 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 200 IPR000504 GO:0003723
Trre13g03585 342 SUPERFAMILY RNA-binding domain, RBD 120 211 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03585 Trre-Chr13 43579056 43580748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03585 119 188 C2H2 Transcription Factor Family AT2G19380 35.714 2.69e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03585 K12741 - gmx:100802911 214.927