Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03584 ATGAGCAAGAAAAAAGAAATGGAGGATTTGGAAAAGAACAGTGGTGACATTGTTGTTTCGAAGGAAGAAATTAGAGTTTTGATCGAAGCTCTTCCCAAACCTCAACTCGTTGATCTTCTCTCTCAACTAGGGTCCAAATATCCTTCAATTGCAGAAGAAATTGAAAGTTTTGCAAATGTTGATCGCACCCAACAAAAGCTTAATGTTCGTCACTTGGACTCAAAAACTTTGTATTCGGCATTGCAAGTTCATGGAGAGATTGAGGAAGGGAATGTGATTCTTGATAGAGACACAGGAAAATCGGCTCAGAGTGCATTGAATGCACCAAGCAACTTCATTGATGGAGTAAGTAAGTTATCTGACGATGAGGGCCTAACCAAAACAACCAGTAGTGCTACTGATCTTTCGCAGAGAAATCTTTATATTGGAAACTTATCACGACGAGTAACAGAAGAAAGGCTGCTCAACTATTTTGAGGTGCATGGTGATGTAGAGGAATGTGTACTTGTCCATCAATATAACAAGGATTTAAATATATCAAGTCGATCTGGTTTCGTTACATACAAGACAGCGGAGGCTGCAAAGAATGCCATTAAAGACCTAGATCAAACCACTCTTTGGGGAACAACTATAACTGTAAAATATGATTTGCACAATGTTGAAGGTGGTCAGCCGTCTGTTCCTGCAAGAGTTGCACTGAATGCTAATGCACCTCATCCAATGGAAACCTTATCTATGACTCCAGAATATGTTGCACCGAATGCTAATTCACCGAATGCTGCACCTCCTTATCCATACCTCCAAACCGATGCACCACCTTTTCCATACCCCCAAACAGGTGCACCATATGTCGCGTCTCCTTATCCATACCCCCAAACTGATGCATCACATGCAGCACCACCTTATCCATACGCCCAAATAGGTGCACGATATGCCGTGTCTCCTTATCCATACCTCCGAACTACTGCACTATATGCTACATCTCCTTATCCAACTCTTCTCACTGCACCTTTTACTCAGTATTATTATTATTATCCTCAGTATTATAATCCCAACCCATGA 1062 0.4134 MSKKKEMEDLEKNSGDIVVSKEEIRVLIEALPKPQLVDLLSQLGSKYPSIAEEIESFANVDRTQQKLNVRHLDSKTLYSALQVHGEIEEGNVILDRDTGKSAQSALNAPSNFIDGVSKLSDDEGLTKTTSSATDLSQRNLYIGNLSRRVTEERLLNYFEVHGDVEECVLVHQYNKDLNISSRSGFVTYKTAEAAKNAIKDLDQTTLWGTTITVKYDLHNVEGGQPSVPARVALNANAPHPMETLSMTPEYVAPNANSPNAAPPYPYLQTDAPPFPYPQTGAPYVASPYPYPQTDASHAAPPYPYAQIGARYAVSPYPYLRTTALYATSPYPTLLTAPFTQYYYYYPQYYNPNP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03584 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 218 IPR000504 GO:0003723
Trre13g03584 353 PANTHER GEO13361P1-RELATED 131 312 - -
Trre13g03584 353 SMART rrm1_1 139 214 IPR000504 GO:0003723
Trre13g03584 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 211 IPR000504 GO:0003723
Trre13g03584 353 Gene3D - 117 221 IPR012677 -
Trre13g03584 353 SUPERFAMILY RNA-binding domain, RBD 131 222 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03584 Trre-Chr13 43579056 43580748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03584 130 199 C2H2 Transcription Factor Family AT2G19380 35.714 2.90e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03584 K12741 - gmx:100802911 227.639